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Genomic language models (GLMs) have emerged as powerful tools for learning representations of DNA sequences, enabling advances in variant prediction, regulatory element identification, and cross-task transfer learning. However, as these…

Machine Learning · Computer Science 2026-03-11 Alexander Nemecek , Wenbiao Li , Xiaoqian Jiang , Jaideep Vaidya , Erman Ayday

Security code review is a time-consuming and labor-intensive process typically requiring integration with automated security defect detection tools. However, existing security analysis tools struggle with poor generalization, high false…

Software Engineering · Computer Science 2026-05-12 Jiaxin Yu , Peng Liang , Yujia Fu , Amjed Tahir , Mojtaba Shahin , Chong Wang , Yangxiao Cai

Large Language Models (LLMs) have demonstrated exceptional coding capability. However, as another critical component of programming proficiency, the debugging capability of LLMs remains relatively unexplored. Previous evaluations of LLMs'…

Software Engineering · Computer Science 2024-06-07 Runchu Tian , Yining Ye , Yujia Qin , Xin Cong , Yankai Lin , Yinxu Pan , Yesai Wu , Haotian Hui , Weichuan Liu , Zhiyuan Liu , Maosong Sun

Large language models for code (LLM4Code) have greatly improved developer productivity but also raise privacy concerns due to their reliance on open-source repositories containing abundant personally identifiable information (PII). Prior…

Software Engineering · Computer Science 2025-12-10 Hua Yang , Alejandro Velasco , Sen Fang , Bowen Xu , Denys Poshyvanyk

With the growing interest on Large Language Models (LLMs) for fault localization and program repair, ensuring the integrity and generalizability of the LLM-based methods becomes paramount. The code in existing widely-adopted benchmarks for…

Software Engineering · Computer Science 2023-10-26 Yonghao Wu , Zheng Li , Jie M. Zhang , Yong Liu

This study examines the impact of tokenized Java code length on the accuracy and explicitness of ten major LLMs in vulnerability detection. Using chi-square tests and known ground truth, we found inconsistencies across models: some, like…

Cryptography and Security · Computer Science 2025-02-04 Jie Lin , David Mohaisen

The rapid advancement of pre-trained language models (PLMs) has demonstrated promising results for various code-related tasks. However, their effectiveness in detecting real-world vulnerabilities remains a critical challenge. While existing…

Cryptography and Security · Computer Science 2025-11-25 Youpeng Li , Weiliang Qi , Xuyu Wang , Fuxun Yu , Xinda Wang

Public leaderboards increasingly suggest that large language models (LLMs) surpass human experts on benchmarks spanning academic knowledge, law, and programming. Yet most benchmarks are fully public, their questions widely mirrored across…

Artificial Intelligence · Computer Science 2026-03-18 Eshwar Reddy M , Sourav Karmakar

Understanding whether and to what extent large language models (LLMs) have memorised training data has important implications for the reliability of their output and the privacy of their training data. In order to cleanly measure and…

Computation and Language · Computer Science 2024-07-30 Till Speicher , Mohammad Aflah Khan , Qinyuan Wu , Vedant Nanda , Soumi Das , Bishwamittra Ghosh , Krishna P. Gummadi , Evimaria Terzi

Large language models (LLMs) have been shown to memorize and reproduce content from their training data, raising significant privacy concerns, especially with web-scale datasets. Existing methods for detecting memorization are primarily…

Cryptography and Security · Computer Science 2026-01-07 Zhenpeng Wu , Jian Lou , Zibin Zheng , Chuan Chen

The leakage of benchmark data into the training data has emerged as a significant challenge for evaluating the capabilities of large language models (LLMs). In this work, we challenge the common assumption that small-scale contamination…

Machine Learning · Computer Science 2025-06-17 Sebastian Bordt , Suraj Srinivas , Valentyn Boreiko , Ulrike von Luxburg

Code Pre-trained Models (CodePTMs) based vulnerability detection have achieved promising results over recent years. However, these models struggle to generalize as they typically learn superficial mapping from source code to labels instead…

Cryptography and Security · Computer Science 2024-06-07 Xiaohu Du , Ming Wen , Jiahao Zhu , Zifan Xie , Bin Ji , Huijun Liu , Xuanhua Shi , Hai Jin

Large language models (LLMs) are increasingly deployed for understanding large codebases, but whether they understand operational semantics of long code context or rely on pattern matching shortcuts remains unclear. We distinguish between…

Computation and Language · Computer Science 2026-04-21 Adam Štorek , Mukur Gupta , Samira Hajizadeh , Prashast Srivastava , Suman Jana

Amid the expanding use of pre-training data, the phenomenon of benchmark dataset leakage has become increasingly prominent, exacerbated by opaque training processes and the often undisclosed inclusion of supervised data in contemporary…

Computation and Language · Computer Science 2024-04-30 Ruijie Xu , Zengzhi Wang , Run-Ze Fan , Pengfei Liu

Generative Large Language Models (LLMs) are increasingly used in non-generative software maintenance tasks, such as fault localization (FL). Success in FL depends on a models ability to reason about program semantics beyond surface-level…

While many have shown how Large Language Models (LLMs) can be applied to a diverse set of tasks, the critical issues of data contamination and memorization are often glossed over. In this work, we address this concern for tabular data.…

Machine Learning · Computer Science 2024-12-05 Sebastian Bordt , Harsha Nori , Vanessa Rodrigues , Besmira Nushi , Rich Caruana

Large Language Models (LLMs) have become dominant in the Natural Language Processing (NLP) field causing a huge surge in progress in a short amount of time. However, their limitations are still a mystery and have primarily been explored…

Software Engineering · Computer Science 2024-04-11 Nathan Cooper , Torsten Scholak

Large Language Models (LLMs) are increasingly integrated into software systems for diverse purposes, due to their versatility, flexibility, and ability to simulate human reasoning to some extent. However, poor integration of LLM inference…

Software Engineering · Computer Science 2026-05-25 Zacharie Chenail-Larcher , Brahim Mahmoudi , Naouel Moha , Quentin Stiévenart , Florent Avellaneda

Large Language Models (LLMs) have training corpora containing large amounts of program code, greatly improving the model's code comprehension and generation capabilities. However, sound comprehensive research on detecting program…

Cryptography and Security · Computer Science 2024-08-22 Yu Liu , Lang Gao , Mingxin Yang , Yu Xie , Ping Chen , Xiaojin Zhang , Wei Chen

We assess how the code reasoning abilities of large language models (LLMs) generalize to different kinds of programs. We present techniques for obtaining in- and out-of-distribution programs with different characteristics: code sampled from…

Software Engineering · Computer Science 2025-04-09 Rem Yang , Julian Dai , Nikos Vasilakis , Martin Rinard
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