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Quantifying transient causal interactions from non-stationary neural signals is a fundamental challenge in neuroscience. Traditional methods are often inadequate for brief neural events, and advanced, event-specific techniques have lacked…

Machine Learning · Computer Science 2025-09-03 Salar Nouri , Kaidi Shao , Shervin Safavi

Background and objective: Cell migration is essential for many biological phenomena with direct impact on human health and disease. One conventional approach to study cell migration involves the quantitative analysis of individual cell…

Quantitative Methods · Quantitative Biology 2023-03-14 Nirbhaya Shajia , Florbela Nunes , M. Ines Rocha , Elsa Ferreira Gomes , Helena Castro

Process analytics is an umbrella of data-driven techniques which includes making predictions for individual process instances or overall process models. At the instance level, various novel techniques have been recently devised, tackling…

Machine Learning · Computer Science 2021-07-29 Johannes De Smedt , Anton Yeshchenko , Artem Polyvyanyy , Jochen De Weerdt , Jan Mendling

Trajectories, sequentially measured quantities that form a path, are an important presence in many different fields, from hadronic beams in physics to electrocardiograms in medicine. Trajectory anal-ysis requires the quantification and…

Quantitative Methods · Quantitative Biology 2023-08-23 Maurício Moreira-Soares , Eduardo Mossmann , Rui D. M. Travasso , José Rafael Bordin

ConsumerCheck is an open source data analysis software tailored for analysis of sensory and consumer data. Since some of the implemented methods are generic, such as PCA, PLSR and PCR, other data from other domains may also be analysed with…

Human-Computer Interaction · Computer Science 2022-01-12 Oliver Tomic , Alexandra Kuznetsova , Per Bruun Brockhoff , Thomas Graff , Tormod Næs

Understanding complex interactions within microbiomes is essential for exploring their roles in health and disease. However, constructing reliable microbiome networks often poses a challenge due to variations in the output of different…

Applications · Statistics 2024-11-14 Rosa Aghdam , Claudia Solis-Lemus

We introduce the R package nlpsem, a comprehensive toolkit for analyzing longitudinal processes within the structural equation modeling (SEM) framework, incorporating individual measurement occasions. This package emphasizes nonlinear…

Methodology · Statistics 2025-12-02 Jin Liu

This review provides a systematic overview of methods that combine covariate-based clustering of observational units (patients) with outcome models for clinical studies. We distinguish between informed-cluster models, where the outcome…

We present MXtalTools, a flexible Python package for the data-driven modelling of molecular crystals, facilitating machine learning studies of the molecular solid state. MXtalTools comprises several classes of utilities: (1) synthesis,…

Machine Learning · Computer Science 2025-11-26 Michael Kilgour , Mark E. Tuckerman , Jutta Rogal

Physiological time series signals reflect complex, multi-scale dynamical processes of the human body. Existing modeling studies focus on static tasks such as classification, event forecasting, or short-horizon next step prediction, while…

There has been a tremendous methodological development of Bayes factors for hypothesis testing in the social and behavioral sciences, and related fields. This development is due to the flexibility of the Bayes factor for testing multiple…

The present work introduces floodlight, an open source Python package built to support and automate team sport data analysis. It is specifically designed for the scientific analysis of spatiotemporal tracking data, event data, and game…

Human-Computer Interaction · Computer Science 2022-06-07 Dominik Raabe , Henrik Biermann , Manuel Bassek , Martin Wohlan , Rumena Komitova , Robert Rein , Tobias Kuppens Groot , Daniel Memmert

Most of applied statistics involves regression analysis of data. This paper presents a stand-alone and menu-driven software package, Bayesian Regression: Nonparametric and Parametric Models. Currently, this package gives the user a choice…

Computation · Statistics 2015-07-15 George Karabatsos

Current machine learning approaches to medical diagnosis often rely on correlational patterns between symptoms and diseases, risking misdiagnoses when symptoms are ambiguous or common across multiple conditions. In this work, we move beyond…

Machine Learning · Computer Science 2025-03-26 Mehul Shetty , Connor Jordan

This paper presents a comprehensive systematic review of generative models (GANs, VAEs, DMs, and LLMs) used to synthesize various medical data types, including imaging (dermoscopic, mammographic, ultrasound, CT, MRI, and X-ray), text,…

Reaching a global view of brain organization requires assembling evidence on widely different mental processes and mechanisms. The variety of human neuroscience concepts and terminology poses a fundamental challenge to relating brain…

Quantitative Methods · Quantitative Biology 2020-02-24 Jérôme Dockès , Russell Poldrack , Romain Primet , Hande Gözükan , Tal Yarkoni , Fabian Suchanek , Bertrand Thirion , Gaël Varoquaux

The development and generation of synthetic data are becoming increasingly vital in the field of statistical disclosure control. The PSInference package provides tools to perform exact inferential analysis on singly imputed synthetic data…

Methodology · Statistics 2025-03-20 Ricardo Moura , Mina Norouzirad , Vitor Augusto , Miguel Fonseca

The Simulation Environment for Atomistic and Molecular Modeling (SEAMM) is an open-source software package written in Python that provides a graphical interface for setting up, executing, and analyzing molecular and materials simulations.…

The bullwhip effect remains operationally persistent despite decades of analytical research. Two computational deficiencies hinder progress: the absence of modular open-source simulation tools for multi-echelon inventory dynamics with…

Optimization and Control · Mathematics 2026-04-16 Mansur M. Arief

Data cleaning is one of the most important tasks in data analysis processes. One of the perennial challenges in data analytics is the detection and handling of non-valid data. Failing to do so can result in inaccurate analytics and…

Databases · Computer Science 2022-05-24 Mayur Kishor Shende , Andres E. Feijoo-Lorenzo , Neeraj Dhanraj Bokde
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