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Large Language Models (LLMs) are revolutionizing bioinformatics, enabling advanced analysis of DNA, RNA, proteins, and single-cell data. This survey provides a systematic review of recent advancements, focusing on genomic sequence modeling,…

Computation and Language · Computer Science 2026-03-03 Zhenyu Wang , Zikang Wang , Jiyue Jiang , Pengan Chen , Xiangyu Shi , Yu Li

Providing students with flexible and timely academic support is a challenge at most colleges and universities, leaving many students without help outside scheduled hours. Large language models (LLMs) are promising for bridging this gap, but…

Computers and Society · Computer Science 2025-09-12 Chang Liu , Loc Hoang , Andrew Stolman , Rene F. Kizilcec , Bo Wu

Large language models (LLMs) often need to balance their internal parametric knowledge with external information, such as user beliefs and content from retrieved documents, in real-world scenarios like RAG or chat-based systems. A model's…

Computation and Language · Computer Science 2026-04-27 Shuowei Li , Haoxin Li , Wenda Chu , Yi Fang

The rapid development of large language models (LLMs) has been witnessed in recent years. Based on the powerful LLMs, multi-modal LLMs (MLLMs) extend the modality from text to a broader spectrum of domains, attracting widespread attention…

Artificial Intelligence · Computer Science 2024-08-06 Zhen Qin , Daoyuan Chen , Wenhao Zhang , Liuyi Yao , Yilun Huang , Bolin Ding , Yaliang Li , Shuiguang Deng

The rise of Large Language Models (LLMs) has led to the widespread deployment of LLM-based systems across diverse domains. As these systems proliferate, understanding the risks associated with their complex supply chains is increasingly…

Software Engineering · Computer Science 2025-07-25 Yujie Ma , Lili Quan , Xiaofei Xie , Qiang Hu , Jiongchi Yu , Yao Zhang , Sen Chen

The paper underscores the significance of Large Language Models (LLMs) in reshaping recommender systems, attributing their value to unique reasoning abilities absent in traditional recommenders. Unlike conventional systems lacking direct…

Information Retrieval · Computer Science 2024-03-20 Arpita Vats , Vinija Jain , Rahul Raja , Aman Chadha

We introduce InternVL 2.5, an advanced multimodal large language model (MLLM) series that builds upon InternVL 2.0, maintaining its core model architecture while introducing significant enhancements in training and testing strategies as…

The rapidly developing field of large multimodal models (LMMs) has led to the emergence of diverse models with remarkable capabilities. However, existing benchmarks fail to comprehensively, objectively and accurately evaluate whether LMMs…

Large Language Models (LLMs) have rapidly become important tools in Biomedical and Health Informatics (BHI), enabling new ways to analyze data, treat patients, and conduct research. This study aims to provide a comprehensive overview of LLM…

Digital Libraries · Computer Science 2024-07-30 Huizi Yu , Lizhou Fan , Lingyao Li , Jiayan Zhou , Zihui Ma , Lu Xian , Wenyue Hua , Sijia He , Mingyu Jin , Yongfeng Zhang , Ashvin Gandhi , Xin Ma

This scoping review examines the emerging field of Large Language Model (LLM)-based pedagogical agents in educational settings. While traditional pedagogical agents have been extensively studied, the integration of LLMs represents a…

Artificial Intelligence · Computer Science 2026-05-19 Shan Li , Juan Zheng

Large language models (LLMs) have been a disruptive innovation in recent years, and they play a crucial role in our daily lives due to their ability to understand and generate human-like text. Their capabilities include natural language…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-17 Akrit Mudvari , Yuang Jiang , Leandros Tassiulas

This paper introduces a novel, multi-source framework for the relational validation of Large Language Models (LLMs). While existing benchmarks have demonstrated LLMs' proficiency at factual recall, their ability to understand and reproduce…

Social and Information Networks · Computer Science 2026-05-22 Moses Boudourides

In this work, we provide a systematic survey of Discrete Diffusion Language Models (dLLMs) and Discrete Diffusion Multimodal Language Models (dMLLMs). Unlike autoregressive (AR) models, dLLMs and dMLLMs adopt a multi-token, parallel…

Machine Learning · Computer Science 2025-09-22 Runpeng Yu , Qi Li , Xinchao Wang

Understanding large-scale, complex software systems is a major challenge for developers, who spend a significant portion of their time on program comprehension. Traditional tools such as static visualizations and reverse engineering…

Software Engineering · Computer Science 2025-08-11 Yoseph Berhanu Alebachew

Evolution, the engine behind the survival and growth of life on Earth, operates through the population-based process of reproduction. Inspired by this principle, this paper formally defines a newly emerging problem -- the population-based…

Computation and Language · Computer Science 2025-03-10 Yiqun Zhang , Peng Ye , Xiaocui Yang , Shi Feng , Shufei Zhang , Lei Bai , Wanli Ouyang , Shuyue Hu

Large language models (LLMs) and transformer-based architectures are increasingly utilized for source code analysis. As software systems grow in complexity, integrating LLMs into code analysis workflows becomes essential for enhancing…

Software Engineering · Computer Science 2025-03-25 Hamed Jelodar , Mohammad Meymani , Roozbeh Razavi-Far

Large language models (LLMs) are poised to significantly impact software development, especially in the Open-Source Software (OSS) sector. To understand this impact, we first outline the mechanisms through which LLMs may influence OSS…

General Economics · Economics 2025-07-02 Sardar Bonabi , Sarah Bana , Vijay Gurbaxani , Tingting Nian

Large language models (LLMs) are increasingly shaping creative work and problem-solving; however, prior research suggests that they may diminish unassisted creativity. To address this tension, a coach-like LLM environment was developed that…

Human-Computer Interaction · Computer Science 2025-10-31 Alon Rosenbaum , Yigal David , Eran Kaufman , Gilad Ravid , Amit Ronen , Assaf Krebs

With hundreds of thousands of language models available on Huggingface today, efficiently evaluating and utilizing these models across various downstream, tasks has become increasingly critical. Many existing methods repeatedly learn…

Computation and Language · Computer Science 2024-10-18 Richard Zhuang , Tianhao Wu , Zhaojin Wen , Andrew Li , Jiantao Jiao , Kannan Ramchandran
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