English
Related papers

Related papers: Biologically-Grounded Multi-Encoder Architectures …

200 papers

The upcoming large scale surveys like LSST are expected to find approximately $10^5$ strong gravitational lenses by analysing data of many orders of magnitude larger than those in contemporary astronomical surveys. In this case,…

Computer Vision and Pattern Recognition · Computer Science 2022-12-27 Hareesh Thuruthipilly , Adam Zadrozny , Agnieszka Pollo , Marek Biesiada

Equivariant graph neural network (GNN) methods for antibody complementarity-determining region (CDR) design achieve the highest sequence recovery but suffer from severe vocabulary collapse. The current best GNN methods over-predict very few…

Machine Learning · Computer Science 2026-05-21 Mansoor Ahmed , Sujin Lee , Umar Khayaz , Murray Patterson

Motivation: The scalable identification of bioactive compounds is essential for contemporary drug discovery. This process faces a key trade-off: structural screening offers scalability but lacks biological context, whereas high-content…

Quantitative Methods · Quantitative Biology 2026-03-17 Xiaoqing Lian , Pengsen Ma , Tengfeng Ma , Zhonghao Ren , Xibao Cai , Zhixiang Cheng , Bosheng Song , He Wang , Xiang Pan , Yangyang Chen , Sisi Yuan , Chen Lin

Blind Image Quality Assessment (BIQA) is a fundamental task in computer vision, which however remains unresolved due to the complex distortion conditions and diversified image contents. To confront this challenge, we in this paper propose a…

Computer Vision and Pattern Recognition · Computer Science 2023-04-12 Guanyi Qin , Runze Hu , Yutao Liu , Xiawu Zheng , Haotian Liu , Xiu Li , Yan Zhang

Transformer architectures have achieved state-of-the-art results on a variety of sequence modeling tasks. However, their attention mechanism comes with a quadratic complexity in sequence lengths, making the computational overhead…

Computation and Language · Computer Science 2022-06-03 Hao Peng , Jungo Kasai , Nikolaos Pappas , Dani Yogatama , Zhaofeng Wu , Lingpeng Kong , Roy Schwartz , Noah A. Smith

Most modern face completion approaches adopt an autoencoder or its variants to restore missing regions in face images. Encoders are often utilized to learn powerful representations that play an important role in meeting the challenges of…

Computer Vision and Pattern Recognition · Computer Science 2021-12-21 Xin Ma , Xiaoqiang Zhou , Huaibo Huang , Gengyun Jia , Zhenhua Chai , Xiaolin Wei

Breast ultrasound interpretation requires simultaneous lesion segmentation and tissue classification. However, conventional multi-task learning approaches suffer from task interference and rigid coordination strategies that fail to adapt to…

Computer Vision and Pattern Recognition · Computer Science 2026-03-03 Abdullah Al Shafi , Md Kawsar Mahmud Khan Zunayed , Safin Ahmmed , Sk Imran Hossain , Engelbert Mephu Nguifo

Ensemble attacks integrate the outputs of surrogate models with diverse architectures, which can be combined with various gradient-based attacks to improve adversarial transferability. However, previous work shows unsatisfactory attack…

Computer Vision and Pattern Recognition · Computer Science 2025-11-14 Yipeng Zou , Qin Liu , Jie Wu , Yu Peng , Guo Chen , Hui Zhou , Guanghui Ye

Anomaly detection is critical for the secure and reliable operation of industrial control systems. As our reliance on such complex cyber-physical systems grows, it becomes paramount to have automated methods for detecting anomalies,…

Machine Learning · Computer Science 2024-05-10 Mayra Macas , Chunming Wu , Walter Fuertes

Recent progress has rapidly advanced our understanding of the mechanisms underlying in-context learning in modern attention-based neural networks. However, existing results focus exclusively on unimodal data; in contrast, the theoretical…

Machine Learning · Statistics 2026-05-19 Nicholas Barnfield , Subhabrata Sen , Pragya Sur

With the benefit of deep learning techniques, recent researches have made significant progress in image compression artifacts reduction. Despite their improved performances, prevailing methods only focus on learning a mapping from the…

Computer Vision and Pattern Recognition · Computer Science 2024-05-16 Li Ma , Yifan Zhao , Peixi Peng , Yonghong Tian

The dichotomy between the challenging nature of obtaining annotations for activities, and the more straightforward nature of data collection from wearables, has resulted in significant interest in the development of techniques that utilize…

Machine Learning · Computer Science 2022-11-14 Harish Haresamudram , Irfan Essa , Thomas Ploetz

Current state-of-the-art machine translation systems are based on encoder-decoder architectures, that first encode the input sequence, and then generate an output sequence based on the input encoding. Both are interfaced with an attention…

Computation and Language · Computer Science 2018-11-02 Maha Elbayad , Laurent Besacier , Jakob Verbeek

Transformers provide a class of expressive architectures that are extremely effective for sequence modeling. However, the key limitation of transformers is their quadratic memory and time complexity $\mathcal{O}(L^2)$ with respect to the…

Machine Learning · Computer Science 2021-10-29 Hongyu Ren , Hanjun Dai , Zihang Dai , Mengjiao Yang , Jure Leskovec , Dale Schuurmans , Bo Dai

Coronary artery diseases are among the leading causes of mortality worldwide. Timely and accurate diagnosis, facilitated by precise coronary artery segmentation, is pivotal in changing patient outcomes. In the realm of biomedical imaging,…

Image and Video Processing · Electrical Eng. & Systems 2023-10-17 Shisheng Zhang , Ramtin Gharleghi , Sonit Singh , Arcot Sowmya , Susann Beier

The task of recognising Handwritten Mathematical Expressions (HMER) is crucial in the fields of digital education and scholarly research. However, it is difficult to accurately determine the length and complex spatial relationships among…

Computer Vision and Pattern Recognition · Computer Science 2023-06-30 Aniket Pal , Krishna Pratap Singh

Transformer-based neural decoders have emerged as a promising approach to error correction coding, combining data-driven adaptability with efficient modeling of long-range dependencies. This paper presents a novel decoder architecture that…

Information Theory · Computer Science 2025-09-22 Chin Wa Lau , Xiang Shi , Ziyan Zheng , Haiwen Cao , Nian Guo

We investigate the expressive power of hybrid recurrent-attention decoders, a class of architectures used in recent open-source language models such as Qwen3-Next and its successors. These models combine Gated Attention heads with recurrent…

Machine Learning · Computer Science 2026-05-19 Tomasz Steifer

Antibody-based therapeutics-including antibody-drug conjugates (ADCs), bispecific antibodies, and novel formats-are reshaping oncology, yet key determinants of efficacy, safety, and manufacturability frequently emerge after conjugation and…

Soft Condensed Matter · Physics 2026-05-18 Alberto Ocana , Jorge R. Espinosa

Lengthy subject- or session-specific data acquisition and calibration remain a key barrier to deploying electroencephalography (EEG)-based brain-computer interfaces (BCIs) outside the laboratory. Previous work has shown that cross subject,…

Quantitative Methods · Quantitative Biology 2025-06-18 Ziheng Chen , Po T. Wang , Mina Ibrahim , Shivali Baveja , Rong Mu , An H. Do , Zoran Nenadic