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The spatial location of cells within tissues and organs is crucial for the manifestation of their specific functions.Spatial transcriptomics technology enables comprehensive measurement of the gene expression patterns in tissues while…

Quantitative Methods · Quantitative Biology 2024-07-12 Shuailin Xue , Fangfang Zhu , Changmiao Wang , Wenwen Min

Pretrained encoders for mathematical texts have achieved significant improvements on various tasks such as formula classification and information retrieval. Yet they remain limited in representing and capturing student strategies for entire…

Computers and Society · Computer Science 2026-04-13 Siddhartha Pradhan , Ethan Prihar , Erin Ottmar

Deep neural networks face several challenges in hyperspectral image classification, including complex and sparse ground object distributions, small clustered structures, and elongated multi-branch features that often lead to missing…

Computer Vision and Pattern Recognition · Computer Science 2025-04-08 Guandong Li , Mengxia Ye

Recent progress in real-time hand pose estimation from surface electromyography (sEMG) has been driven by the emg2pose benchmark, whose original baseline study concluded that velocity decoding outperforms position decoding in both…

Human-Computer Interaction · Computer Science 2026-03-10 Nima Hadidi , Johannes Lee , Ebrahim Feghhi , Michael Yuan , Jonathan C. Kao

In this paper, we propose a new unsupervised feature learning framework, namely Deep Sparse Coding (DeepSC), that extends sparse coding to a multi-layer architecture for visual object recognition tasks. The main innovation of the framework…

Machine Learning · Computer Science 2013-12-23 Yunlong He , Koray Kavukcuoglu , Yun Wang , Arthur Szlam , Yanjun Qi

We introduce a scalable approach for object pose estimation trained on simulated RGB views of multiple 3D models together. We learn an encoding of object views that does not only describe an implicit orientation of all objects seen during…

Computer Vision and Pattern Recognition · Computer Science 2020-04-06 Martin Sundermeyer , Maximilian Durner , En Yen Puang , Zoltan-Csaba Marton , Narunas Vaskevicius , Kai O. Arras , Rudolph Triebel

The success of deep learning techniques in the computer vision domain has triggered a range of initial investigations into their utility for visual place recognition, all using generic features from networks that were trained for other…

Computer Vision and Pattern Recognition · Computer Science 2017-01-20 Zetao Chen , Adam Jacobson , Niko Sunderhauf , Ben Upcroft , Lingqiao Liu , Chunhua Shen , Ian Reid , Michael Milford

Implementations of symmetric positive definite (SPD) matrix-based neural networks for neural decoding remain fragmented across research codebases and Python packages. Existing implementations often employ ad hoc handling of manifold…

Neurons and Cognition · Quantitative Biology 2026-02-27 Bruno Aristimunha , Ce Ju , Antoine Collas , Florent Bouchard , Ammar Mian , Bertrand Thirion , Sylvain Chevallier , Reinmar Kobler

As transformers are equivariant to the permutation of input tokens, encoding the positional information of tokens is necessary for many tasks. However, since existing positional encoding schemes have been initially designed for NLP tasks,…

Computer Vision and Pattern Recognition · Computer Science 2024-06-10 Takeru Miyato , Bernhard Jaeger , Max Welling , Andreas Geiger

We treat shape co-segmentation as a representation learning problem and introduce BAE-NET, a branched autoencoder network, for the task. The unsupervised BAE-NET is trained with a collection of un-segmented shapes, using a shape…

Computer Vision and Pattern Recognition · Computer Science 2019-08-15 Zhiqin Chen , Kangxue Yin , Matthew Fisher , Siddhartha Chaudhuri , Hao Zhang

Resolution generalization in image generation tasks enables the production of higher-resolution images with lower training resolution overhead. However, a key obstacle for diffusion transformers in addressing this problem is the mismatch…

Computer Vision and Pattern Recognition · Computer Science 2026-01-08 Liang Hou , Cong Liu , Mingwu Zheng , Xin Tao , Pengfei Wan , Di Zhang , Kun Gai

Given an image dataset, we are often interested in finding data generative factors that encode semantic content independently from pose variables such as rotation and translation. However, current disentanglement approaches do not impose…

Computer Vision and Pattern Recognition · Computer Science 2019-09-27 Tristan Bepler , Ellen D. Zhong , Kotaro Kelley , Edward Brignole , Bonnie Berger

To encode point clouds containing both geometry and attributes, most learning-based compression schemes treat geometry and attribute coding separately, employing distinct encoders and decoders. This not only increases computational…

Computer Vision and Pattern Recognition · Computer Science 2025-05-23 Kai Hsiang Hsieh , Monyneath Yim , Jui Chiu Chiang

Accurate predictions rely on the expressiveness power of graph deep learning frameworks like graph neural networks and graph transformers, where a positional encoding mechanism has become much more indispensable in recent state-of-the-art…

Machine Learning · Computer Science 2025-06-12 Katherine Tieu , Dongqi Fu , Zihao Li , Ross Maciejewski , Jingrui He

Cycles are fundamental elements in graph-structured data and have demonstrated their effectiveness in enhancing graph learning models. To encode such information into a graph learning framework, prior works often extract a summary quantity,…

Machine Learning · Computer Science 2023-12-01 Zuoyu Yan , Tengfei Ma , Liangcai Gao , Zhi Tang , Chao Chen , Yusu Wang

Vector-mode geospatial data -- points, lines, and polygons -- must be encoded into an appropriate form in order to be used with traditional machine learning and artificial intelligence models. Encoding methods attempt to represent a given…

Machine Learning · Computer Science 2025-06-06 John Collins

The alignment of serial-section electron microscopy (ssEM) images is critical for efforts in neuroscience that seek to reconstruct neuronal circuits. However, each ssEM plane contains densely packed structures that vary from one section to…

Computer Vision and Pattern Recognition · Computer Science 2017-12-06 Inwan Yoo , David G. C. Hildebrand , Willie F. Tobin , Wei-Chung Allen Lee , Won-Ki Jeong

Learning dense correspondences across deformable 3D shapes remains a long-standing challenge due to structural variability, non-isometric deformation, and inconsistent topology. Existing methods typically trade off generalization, geometric…

Computer Vision and Pattern Recognition · Computer Science 2026-05-19 Soyeon Yoon , Chang Wook Seo , Hyunjung Shim

The local inductive bias of message-passing graph neural networks (GNNs) hampers their ability to exploit key structural information (e.g., connectivity and cycles). Positional encoding (PE) and Persistent Homology (PH) have emerged as two…

Machine Learning · Computer Science 2025-06-09 Yogesh Verma , Amauri H. Souza , Vikas Garg

Polygonal meshes have become the standard for discretely approximating 3D shapes, thanks to their efficiency and high flexibility in capturing non-uniform shapes. This non-uniformity, however, leads to irregularity in the mesh structure,…

Computer Vision and Pattern Recognition · Computer Science 2023-07-04 Giuseppe Vecchio , Luca Prezzavento , Carmelo Pino , Francesco Rundo , Simone Palazzo , Concetto Spampinato
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