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We introduce an explainability method for biomedical hypothesis generation systems, built on top of the novel Hypothesis Generation Context Retriever framework. Our approach combines semantic graph-based retrieval and relevant…

Information Retrieval · Computer Science 2025-11-11 Ilya Tyagin , Saeideh Valipour , Aliaksandra Sikirzhytskaya , Michael Shtutman , Ilya Safro

Consider the problem of estimating the causal effect of some attribute of a text document; for example: what effect does writing a polite vs. rude email have on response time? To estimate a causal effect from observational data, we need to…

Machine Learning · Statistics 2023-02-09 Lin Gui , Victor Veitch

Causal knowledge extraction is the task of extracting relevant causes and effects from text by detecting the causal relation. Although this task is important for language understanding and knowledge discovery, recent works in this domain…

Computation and Language · Computer Science 2023-08-09 Anik Saha , Oktie Hassanzadeh , Alex Gittens , Jian Ni , Kavitha Srinivas , Bulent Yener

We present Causal-Adapter, a modular framework that adapts frozen text-to-image diffusion backbones for counterfactual image generation. Our method supports causal interventions on target attributes and consistently propagates their effects…

Computer Vision and Pattern Recognition · Computer Science 2026-05-18 Lei Tong , Zhihua Liu , Chaochao Lu , Dino Oglic , Tom Diethe , Philip Teare , Sotirios A. Tsaftaris , Chen Jin

While code generation has been widely used in various software development scenarios, the quality of the generated code is not guaranteed. This has been a particular concern in the era of large language models (LLMs)- based code generation,…

Software Engineering · Computer Science 2023-10-11 Zhenlan Ji , Pingchuan Ma , Zongjie Li , Shuai Wang

Foundation models like ChatGPT and GPT-4 have revolutionized artificial intelligence, exhibiting remarkable abilities to generalize across a wide array of tasks and applications beyond their initial training objectives. However, graph…

Machine Learning · Computer Science 2025-01-22 Yufei He , Yuan Sui , Xiaoxin He , Bryan Hooi

Causal discovery methods are intrinsically constrained by the set of assumptions needed to ensure structure identifiability. Moreover additional restrictions are often imposed in order to simplify the inference task: this is the case for…

Machine Learning · Computer Science 2023-04-07 Francesco Montagna , Nicoletta Noceti , Lorenzo Rosasco , Kun Zhang , Francesco Locatello

Causal inference is the process of capturing cause-effect relationship among variables. Most existing works focus on dealing with structured data, while mining causal relationship among factors from unstructured data, like text, has been…

Computation and Language · Computer Science 2021-04-22 Xiao Liu , Da Yin , Yansong Feng , Yuting Wu , Dongyan Zhao

Current methods for textual analysis rely on data annotated within predefined ontologies, often embedding human bias within black-box models. Despite achieving near-perfect performance, these approaches exploit unstructured, linear pattern…

Computation and Language · Computer Science 2026-03-11 Diego Revilla , Martin Fernandez-de-Retana , Lingfeng Chen , Aritz Bilbao-Jayo , Miguel Fernandez-de-Retana

Temporal link prediction (TLP) models are commonly evaluated based on predictive accuracy, yet such evaluations do not assess whether these models capture the causal mechanisms that govern temporal interactions. In this work, we propose a…

Machine Learning · Computer Science 2026-02-03 Aniq Ur Rahman , Justin P. Coon

We study the problem of causal structure learning from data using optimal transport (OT). Specifically, we first provide a constraint-based method which builds upon lower-triangular monotone parametric transport maps to design conditional…

Methodology · Statistics 2023-05-30 Sina Akbari , Luca Ganassali , Negar Kiyavash

A common theme in causal inference is learning causal relationships between observed variables, also known as causal discovery. This is usually a daunting task, given the large number of candidate causal graphs and the combinatorial nature…

Machine Learning · Statistics 2022-10-11 Romain Lopez , Jan-Christian Hütter , Jonathan K. Pritchard , Aviv Regev

Causal understanding is essential for many kinds of decision-making, but causal inference from observational data has typically only been applied to structured, low-dimensional datasets. While text classifiers produce low-dimensional…

Computation and Language · Computer Science 2018-10-03 Zach Wood-Doughty , Ilya Shpitser , Mark Dredze

Random delays weaken the temporal correspondence between actions and subsequent state feedback, making it difficult for agents to identify the true propagation process of action effects. In cross-task scenarios, changes in task objectives…

Machine Learning · Computer Science 2026-05-13 Chenran Zhao , Dianxi Shi , Yaowen Zhang , Chunping Qiu , Shaowu Yang

AI systems that serve natural language questions over databases promise to unlock tremendous value. Such systems would allow users to leverage the powerful reasoning and knowledge capabilities of language models (LMs) alongside the scalable…

Ever growing number of image documents available on the Internet continuously motivates research in better annotation models and more efficient retrieval methods. Formal knowledge representation of objects and events in pictures, their…

Information Retrieval · Computer Science 2017-12-06 Marko Horvat , Anton Grbin , Gordan Gledec

Causal discovery aims to infer causal relationships among variables from observational data, typically represented by a directed acyclic graph (DAG). Most existing methods assume independent and identically distributed observations, an…

Methodology · Statistics 2026-03-27 Alex Chen , Qing Zhou

In-context learning (ICL) is an effective approach to help large language models (LLMs) adapt to various tasks by providing demonstrations of the target task. Considering the high cost of labeling demonstrations, many methods propose…

Computation and Language · Computer Science 2024-11-04 Dingzirui Wang , Xuanliang Zhang , Qiguang Chen , Longxu Dou , Xiao Xu , Rongyu Cao , Yingwei Ma , Qingfu Zhu , Wanxiang Che , Binhua Li , Fei Huang , Yongbin Li

Forecasting future links is a central task in temporal graph (TG) reasoning, requiring models to leverage historical interactions to predict upcoming ones. Traditional neural approaches, such as temporal graph neural networks, achieve…

Representation learning on text-attributed graphs (TAGs), where nodes are represented by textual descriptions, is crucial for textual and relational knowledge systems and recommendation systems. Currently, state-of-the-art embedding methods…

Computation and Language · Computer Science 2024-12-24 Yi Fang , Dongzhe Fan , Sirui Ding , Ninghao Liu , Qiaoyu Tan
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