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Machine learning potential-driven molecular dynamics (MD) simulations have significantly enhanced the predictive accuracy of thermal transport properties across diverse materials. However, extracting phonon-mode-resolved insights from these…

Computational Physics · Physics 2025-09-18 Ting Liang , Wenwu Jiang , Ke Xu , Hekai Bu , Zheyong Fan , Wengen Ouyang , Jianbin Xu

Double phosphorylation of protein kinases is a common feature of signalling cascades. This motif may reduce cross-talk between signalling pathways, as the second phosphorylation site allows for proofreading, especially when phosphorylation…

Molecular Networks · Quantitative Biology 2015-05-26 Thomas E. Ouldridge , Pieter Rein ten Wolde

Tracking single molecules is instrumental for quantifying the transport of molecules and nanoparticles in biological samples, e.g., in brain drug delivery studies. Existing intensity-based localisation methods are not developed for imaging…

The advent of single molecule microscopy has revolutionized biological investigations by providing a powerful tool for the study of intercellular and intracellular trafficking processes of protein molecules which was not available before…

Signal Processing · Electrical Eng. & Systems 2020-11-26 Milad R. Vahid , Bernard Hanzon , Raimund J. Ober

Deep learning has become an extremely effective tool for image classification and image restoration problems. Here, we apply deep learning to microscopy, and demonstrate how neural networks can exploit the chromatic dependence of the…

Optics · Physics 2018-07-05 Eran Hershko* , Lucien E. Weiss* , Tomer Michaeli , Yoav Shechtman

Optical microscopy provides rich spatio-temporal information characterizing in vivo molecular motion. However, effective forces and other parameters used to summarize molecular motion change over time in live cells due to latent state…

Quantitative Methods · Quantitative Biology 2015-11-06 Christopher P. Calderon , Kerry S. Bloom

Semi-supervised learning (SSL) uses unlabeled data to compensate for the scarcity of annotated images and the lack of method generalization to unseen domains, two usual problems in medical segmentation tasks. In this work, we propose…

Computer Vision and Pattern Recognition · Computer Science 2021-09-15 Reda Abdellah Kamraoui , Vinh-Thong Ta , Nicolas Papadakis , Fanny Compaire , José V Manjon , Pierrick Coupé

A method is proposed to pin down an unambiguous proof for single molecule surface enhanced Raman spectroscopy (SERS). The simultaneous use of two analyte molecules enables a clear confirmation of the single (or few) molecule nature of the…

Chemical Physics · Physics 2007-05-23 E. C. Le Ru , M. Meyer , P. G. Etchegoin

Continuum models for ion transport through polyamide nanopores require solving partial differential equations (PDEs) through complex pore geometries. Resolving spatiotemporal features at this length and time-scale can make solving these…

Machine Learning · Computer Science 2023-05-03 Danyal Rehman , John H. Lienhard

Photomultiplier tubes (PMTs) are widely deployed at neutrino and dark matter experiments for photon counting. When multiple photons hit a PMT consecutively, their photo-electron (PE) pulses pile up to hinder the precise measurements of the…

High Energy Physics - Experiment · Physics 2025-09-12 Yuyi Wang , Aiqiang Zhang , Yiyang Wu , Benda Xu , Xuewei Liu , Jiajie Chen , Zhe Wang , Shaomin Chen

Nanoporous metals are extensively investigated as platforms for applications in plasmonics. They present high surface areas and strong local electric fields that can be tuned at different energies, playing with the choice of the metals and…

Physical models of biological systems can become difficult to interpret when they have a large number of parameters. But the models themselves actually depend on (i.e. are sensitive to) only a subset of those parameters. Rigorously…

Biological Physics · Physics 2018-11-27 Chieh-Ting Hsu , Gary J. Brouhard , Paul François

In clinical settings, monitoring hemodynamics is crucial for managing patient prognosis, necessitating the integrated analysis of multiple physiological signals. While recent research has analyzed single signals such as electrocardiography…

Signal Processing · Electrical Eng. & Systems 2025-09-12 Seong-A Park , Jong-Eui Chae , Sungdong Kim , Hyung-Chul Lee , Hyun-Lim Yang

In terms of 3D imaging speed and system cost, the single-camera system projecting single-frequency patterns is the ideal option among all proposed Fringe Projection Profilometry (FPP) systems. This system necessitates a robust spatial phase…

Image and Video Processing · Electrical Eng. & Systems 2023-03-14 Xiaolong Luo , Wanzhong Song , Songlin Bai , Yu Li , Zhihe Zhao

Hyperspectral images (HSIs) capture rich spectral signatures that reveal vital material properties, offering broad applicability across various domains. However, the scarcity of labeled HSI data limits the full potential of deep learning,…

Computer Vision and Pattern Recognition · Computer Science 2025-05-07 Shaheer Mohamed , Tharindu Fernando , Sridha Sridharan , Peyman Moghadam , Clinton Fookes

Single-molecule tracking is a powerful way to look at the dynamic organization of plasma membranes. However, there are some limitations to its use. For example, it was recently observed, using numerical simulation, that time-averaging…

Quantitative Methods · Quantitative Biology 2009-11-13 Nicolas Destainville , Laurence Salome

This study introduces PEFT-DML, a parameter-efficient deep metric learning framework for robust multi-modal 3D object detection in autonomous driving. Unlike conventional models that assume fixed sensor availability, PEFT-DML maps diverse…

Computer Vision and Pattern Recognition · Computer Science 2025-12-02 Abdolazim Rezaei , Mehdi Sookhak

Controlling quantum light-matter interactions at scales smaller than the diffraction limit at the single quantum emitter level is a critical challenge to the goal of advancing quantum technologies. We introduce a novel material platform…

We have previously introduced Spectral Diffusion Posterior Sampling (Spectral DPS) as a framework for accurate one-step material decomposition by integrating analytic spectral system models with priors learned from large datasets. This work…

Medical Physics · Physics 2025-03-31 Xiao Jiang , Grace J. Gang , J. Webster Stayman

Single-molecule tip-enhanced Raman spectroscopy (TERS) under ultra-high vacuum (UHV) and cryogenic conditions enables exploration of the relations between the adsorption geometry, electronic state, and vibrational fingerprints of individual…