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The shapes of epithelial tissues result from a complex interplay of contractile forces in the cytoskeleta of the cells in the tissue, and adhesion forces between them. A host of discrete, cell-based models describe these forces by assigning…

Soft Condensed Matter · Physics 2019-02-27 Pierra A. Haas , Raymond E. Goldstein

This paper explores the phase space structures characterising transport for a double-well van der Waals potential surface. Trajectories are classified as inter-well, intra-well, and escaping-from-a-well to define different dynamical fates.…

We study a simple model describing superradiance in a system of two-level atoms interacting with a single-mode bosonic field. The model permits a continuous crossover between integrable and partially chaotic regimes and shows a complex…

Quantum Physics · Physics 2017-06-07 Michal Kloc , Pavel Stransky , Pavel Cejnar

Conformational properties of a single flexible polyelectrolyte chain in a poor solvent are studied using constant temperature molecular dynamics simulation. The effects of counterions are explicitly taken in to account. Structural…

Statistical Mechanics · Physics 2012-12-04 Anoop Varghese , Satyavani Vemparala , R. Rajesh

We construct a model of cell reprogramming (the conversion of fully differentiated cells to a state of pluripotency, known as induced pluripotent stem cells, or iPSCs) which builds on key elements of cell biology viz. cell cycles and cell…

Cell Behavior · Quantitative Biology 2017-09-25 R Hannam , A Annibale , R Kuehn

We refine previous results concerning the Renewal Contact Processes. We significantly widen the family of distributions for the interarrival times for which the critical value can be shown to be strictly positive. The result now holds for…

Probability · Mathematics 2026-02-02 Luiz Renato Fontes , Thomas S. Mountford , Daniel Ungaretti , Maria Eulália Vares

This work is devoted to the analysis of the linear Boltzmann equation in a bounded domain, in the presence of a force deriving from a potential. The collision operator is allowed to be degenerate in the following two senses: (1) the…

Analysis of PDEs · Mathematics 2014-02-03 Daniel Han-Kwan , Matthieu Léautaud

We propose a method of describing a phase transition in a cell fluid model with pair interaction potential that includes repulsive and attractive parts. An exact representation of the grand partition function of this model is obtained in…

Statistical Mechanics · Physics 2017-06-23 M. P. Kozlovskii , O. A. Dobush

We consider phase coherence collapse and revival in deep optical lattices, and calculate within the Bose-Hubbard model the revival amplitude damping incurred by a finite tunneling coupling of the lattice wells (after sweeping from the…

Other Condensed Matter · Physics 2008-12-10 Uwe R. Fischer , Ralf Schützhold

This work examines superradiance in initially inverted clouds of \textit{multi-level} atoms. We develop a set of equations that can approximately calculate the temporal evolution of $N$ coupled atoms. This allows us to simulate clouds…

Quantum Physics · Physics 2017-04-05 Robert Tyler Sutherland , Francis Robicheaux

We study one-dimensional exclusion processes in two coupled closed rings consisting of a common diffusive channel and two parallel active (driven) channels. Our model displays bulk-driven phase transition and phase coexistence in the form…

Statistical Mechanics · Physics 2013-03-27 Rakesh Chatterjee , Anjan Kumar Chandra , Abhik Basu

One of the most important issues of quantum engineering is the construction of low-dimensional structures possessing desirable properties. For example, in different areas of possible applications of the structures containing quantum wells…

Mesoscale and Nanoscale Physics · Physics 2007-06-26 A. A. Suzko , I. Tralle

In a recent paper Yu and Eberly [Phys. Rev. Lett. {\bf 93}, 140404 (2004)] have shown that two initially entangled and afterwards not interacting qubits can become completely disentangled in a finite time. We study transient entanglement…

Quantum Physics · Physics 2009-11-13 Z. Ficek , R. Tanas

Reversibility of state transitions is intensively studied topic in many scientific disciplines over many years. In cell biology, it plays an important role in epigenetic variation of phenotypes, known as phenotypic plasticity. More…

Populations and Evolution · Quantitative Biology 2018-05-23 Denis Horvath , Branislav Brutovsky

We investigate phase transitions in a solid-on-solid model where double-height steps as well as single-height steps are allowed. Without the double-height steps, repulsive interactions between up-up or down-down step pairs give rise to a…

Statistical Mechanics · Physics 2009-10-31 Jae Dong Noh

The morphogenesis of cells and tissues involves an interplay between chemical signals and active forces on their surrounding surface layers. The complex interaction of hydrodynamics and material flows on such active surfaces leads to…

Cell Behavior · Quantitative Biology 2023-06-30 Sebastian Aland , Claudia Wohlgemuth

We derive a new effective macroscopic Cahn-Hilliard equation whose homogeneous free energy is represented by 4-th order polynomials, which form the frequently applied double-well potential. This upscaling is done for perforated/strongly…

Mathematical Physics · Physics 2013-10-02 Markus Schmuck , Marc Pradas , Greg A. Pavliotis , Serafim Kalliadasis

In this short note we see that double-well phase transitions exhibit more rigidity than their minimal hypersurface counterparts.

Differential Geometry · Mathematics 2023-08-03 Christos Mantoulidis

In some recent papers some theorems on sufficiency conditions for the occurrence of a $\mathbb{Z}_2$-symmetry breaking phase transition ($\mathbb{Z}_2$-SBPT) have been showed making use of geometric-topological concepts of potential energy…

Statistical Mechanics · Physics 2020-06-25 F. Baroni

Thermal convection in an inclined layer between two parallel walls kept at different fixed temperatures is studied for fixed Prandtl number Pr=1.07. Depending on the angle of inclination and the imposed temperature difference, the flow…

Pattern Formation and Solitons · Physics 2020-08-26 Florian Reetz , Tobias M. Schneider
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