English
Related papers

Related papers: The Mechanistic Invariance Test: Genomic Language …

200 papers

The latest paradigm shift in software development brings in the innovation and automation afforded by Large Language Models (LLMs), showcased by Generative Pre-trained Transformer (GPT), which has shown remarkable capacity to generate code…

Software Engineering · Computer Science 2024-06-12 Xiaoyin Wang , Dakai Zhu

Large Language Models (LLMs) have achieved remarkable success in tasks requiring complex reasoning, such as code generation, mathematical problem solving, and algorithmic synthesis -- especially when aided by reasoning tokens and…

Computation and Language · Computer Science 2025-06-13 Jaechul Roh , Varun Gandhi , Shivani Anilkumar , Arin Garg

Large Language Models (LLMs) are increasingly applied to automate software engineering tasks, including the generation of UML class diagrams from natural language descriptions. While prior work demonstrates that LLMs can produce…

Software Engineering · Computer Science 2026-04-07 Rabia Iftikhar , Andreas Rausch

In this retrospective study, a dataset was constructed with two parts. The first part included 1,656 synthetic chest radiology reports generated by GPT-4 using specified prompts, with 828 being error-free synthetic reports and 828…

Computation and Language · Computer Science 2025-04-08 Cong Sun , Kurt Teichman , Yiliang Zhou , Brian Critelli , David Nauheim , Graham Keir , Xindi Wang , Judy Zhong , Adam E Flanders , George Shih , Yifan Peng

Vision-language models (VLMs) and the recent surge of Multimodal Large Language Models (MLLMs) have revolutionized artificial intelligence with unprecedented cross-modal alignment and zero-shot generalization. However, enabling them to…

Computer Vision and Pattern Recognition · Computer Science 2026-05-19 Yuyang Liu , Qiuhe Hong , Linlan Huang , Alexandra Gomez-Villa , Dipam Goswami , Xialei Liu , Joost van de Weijer , Yonghong Tian

This study is a pioneering endeavor to investigate the capabilities of Large Language Models (LLMs) in addressing conceptual questions within the domain of mechanical engineering with a focus on mechanics. Our examination involves a…

Computation and Language · Computer Science 2024-01-25 Jie Tian , Jixin Hou , Zihao Wu , Peng Shu , Zhengliang Liu , Yujie Xiang , Beikang Gu , Nicholas Filla , Yiwei Li , Ning Liu , Xianyan Chen , Keke Tang , Tianming Liu , Xianqiao Wang

In-context learning (ICL) effectively conditions large language models (LLMs) for molecular tasks, such as property prediction and molecule captioning, by embedding carefully selected demonstration examples into the input prompt. This…

Machine Learning · Computer Science 2025-02-11 Ali Al-Lawati , Jason Lucas , Zhiwei Zhang , Prasenjit Mitra , Suhang Wang

Large Language Models (LLMs) are increasingly used for automated unit test generation. However, it remains unclear whether these tests reflect genuine reasoning about program behavior or simply reproduce superficial patterns learned during…

Software Engineering · Computer Science 2026-03-25 Sabaat Haroon , Mohammad Taha Khan , Muhammad Ali Gulzar

Large language models (LLMs) achieve impressive results on advanced mathematics benchmarks but sometimes fail on basic arithmetic tasks, raising the question of whether they have truly grasped fundamental arithmetic rules or are merely…

Computation and Language · Computer Science 2025-09-18 Yang Yan , Yu Lu , Renjun Xu , Zhenzhong Lan

Protein language models (PLMs) face a fundamental divide: masked language models (MLMs) excel at fitness prediction while causal models enable generation, forcing practitioners to maintain separate architectures. We introduce…

Machine Learning · Computer Science 2026-02-03 Furkan Eris

Large Language Models (LLMs) are increasingly used in intelligent systems that perform reasoning, summarization, and code generation. Their ability to follow natural-language instructions, while powerful, also makes them vulnerable to a new…

Cryptography and Security · Computer Science 2025-11-13 Daniyal Ganiuly , Assel Smaiyl

With the rapid improvement of machine learning (ML) models, cognitive scientists are increasingly asking about their alignment with how humans think. Here, we ask this question for computer vision models and human sensitivity to geometric…

Computer Vision and Pattern Recognition · Computer Science 2025-05-20 Zekun Wang , Sashank Varma

The robustness of Vision Language Models (VLMs) is commonly assessed through output-level invariance, implicitly assuming that stable predictions reflect stable multimodal processing. In this work, we argue that this assumption is…

Due to their architecture and vast pre-training data, large language models (LLMs) demonstrate strong text classification performance. However, LLM output - here, the category assigned to a text - depends heavily on the wording of the…

Computation and Language · Computer Science 2025-12-04 Kylie L. Anglin , Stephanie Milan , Brittney Hernandez , Claudia Ventura

Multimodal Large Language Models (MLLMs) have been increasingly used as automatic evaluators-a paradigm known as MLLM-as-a-Judge. However, their reliability and vulnerabilities to biases remain underexplored. We find that many MLLM judges…

Computation and Language · Computer Science 2026-04-24 Sua Lee , Sanghee Park , Jinbae Im

We investigated visual reasoning limitations of both multimodal large language models (MLLMs) and image generation models (IGMs) by creating a novel benchmark to systematically compare failure modes across image-to-text and text-to-image…

Computer Vision and Pattern Recognition · Computer Science 2026-01-27 Aahana Basappa , Pranay Goel , Anusri Karra , Anish Karra , Asa Gilmore , Kevin Zhu

Large language models (LLMs) are having transformative impacts across a wide range of scientific fields, particularly in the biomedical sciences. Just as the goal of Natural Language Processing is to understand sequences of words, a major…

Genomics · Quantitative Biology 2024-09-24 Gonzalo Benegas , Chengzhong Ye , Carlos Albors , Jianan Canal Li , Yun S. Song

As large language models (LLMs) transition from chat interfaces to integral components of stochastic pipelines and systems approaching general intelligence, the ability to faithfully sample from specified probability distributions has…

Computation and Language · Computer Science 2026-04-27 Minda Zhao , Yilun Du , Mengyu Wang

Verifying real-world programs often requires inferring loop invariants with nonlinear constraints. This is especially true in programs that perform many numerical operations, such as control systems for avionics or industrial plants.…

Software Engineering · Computer Science 2020-11-03 Jianan Yao , Gabriel Ryan , Justin Wong , Suman Jana , Ronghui Gu

Large Language Models such as GPTs (Generative Pre-trained Transformers) exhibit remarkable capabilities across a broad spectrum of applications. Nevertheless, due to their intrinsic complexity, these models present substantial challenges…

Machine Learning · Computer Science 2024-10-17 Ashkan Golgoon , Khashayar Filom , Arjun Ravi Kannan