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A discrete-time model of reacting evolving fields, transported by a bidimensional chaotic fluid flow, is studied. Our approach is based on the use of a Lagrangian scheme where {\it fluid particles} are advected by a $2d$ symplectic map…

Advection of entities induced by gradients in attractant concentration fields is observed via diffusiophoresis in colloids and via chemotaxis in microorganisms. Mathematically, both diffusiophoresis and chemotaxis follow similar…

Populations and Evolution · Quantitative Biology 2024-10-07 Benjamin M. Alessio , Ankur Gupta

Graph neural networks (GNNs) have shown remarkable success in learning representations for graph-structured data. However, GNNs still face challenges in modeling complex phenomena that involve feature transportation. In this paper, we…

Machine Learning · Computer Science 2023-12-21 Moshe Eliasof , Eldad Haber , Eran Treister

How diversity is maintained in natural ecosystems is a long-standing question in Theoretical Ecology. By studying a system that combines ecological dynamics, heterogeneous interactions and spatial structure, we uncover a new mechanism for…

Populations and Evolution · Quantitative Biology 2024-03-21 Giulia Garcia Lorenzana , Ada Altieri , Giulio Biroli

Diffusion-based classifiers such as those relying on the Personalized PageRank and the Heat kernel, enjoy remarkable classification accuracy at modest computational requirements. Their performance however is affected by the extent to which…

Machine Learning · Statistics 2019-02-20 Dimitris Berberidis , Athanasios N. Nikolakopoulos , Georgios B. Giannakis

Diffusion-based graph generative models have recently obtained promising results for graph generation. However, existing diffusion-based graph generative models are mostly one-shot generative models that apply Gaussian diffusion in the…

Artificial Intelligence · Computer Science 2023-07-19 Lingkai Kong , Jiaming Cui , Haotian Sun , Yuchen Zhuang , B. Aditya Prakash , Chao Zhang

The spatio-temporal dynamics of a population present one of the most fascinating aspects and challenges for ecological modelling. In this article we review some simple mathematical models, based on one dimensional…

Populations and Evolution · Quantitative Biology 2008-11-18 A. B. Ryabov , B. Blasius

We study the dynamics of diffusion processes acting on directed multiplex networks, i.e., coupled multilayer networks where at least one layer consists of a directed graph. We reveal that directed multiplex networks may exhibit a faster…

Physics and Society · Physics 2018-09-26 Alejandro Tejedor , Anthony Longjas , Efi Foufoula-Georgiou , Tryphon Georgiou , Yamir Moreno

Generation of graphs is a major challenge for real-world tasks that require understanding the complex nature of their non-Euclidean structures. Although diffusion models have achieved notable success in graph generation recently, they are…

Machine Learning · Computer Science 2024-06-04 Jaehyeong Jo , Dongki Kim , Sung Ju Hwang

This paper develops and analyzes a diffusion-advection model coupling population dynamics with toxicant transport, incorporating a boundary protection zone. For both upstream and downstream protection zone configurations, we investigate the…

Populations and Evolution · Quantitative Biology 2025-08-05 Jing Gao , Xiaoli Wang , Guohong Zhang

Estimating population-level prevalence and transmission dynamics of wildlife pathogens can be challenging, partly because surveillance data is sparse, detection-driven, and unevenly sequenced. Using highly pathogenic avian influenza A/H5…

Populations and Evolution · Quantitative Biology 2026-01-16 Haley Stone , Jing Du , Yang Yang , Ashna Desai , Rebecca Dawson , Hao Xue , David Heslop , Matthew Scotch , Andreas Züfle , C. Raina MacIntyre , Flora Salim

We introduce a model designed to account for the influence of a line with fast diffusion-such as a road or another transport network-on the dynamics of a population in an ecological niche. This model consists of a system of coupled…

Analysis of PDEs · Mathematics 2019-12-13 Henri Berestycki , Romain Ducasse , Luca Rossi

Mathematical network models are extremely useful to capture complex propagation processes between different regions (nodes), for example the spread of an infectious agent between different countries, or the transport and replication of…

Biological Physics · Physics 2026-04-10 Hadrien Oliveri , Emilia Cozzolino , Alain Goriely

Understanding the mutual interdependence between the behavior of dynamical processes on networks and the underlying topologies promises new insight for a large class of empirical networks. We present a generic approach to investigate this…

Disordered Systems and Neural Networks · Physics 2012-08-08 Steffen Karalus , Markus Porto

The spatial organization of individuals and their interactions in communities are important factors known to preserve diversity in many complex systems. Inspired by metapopulation models from ecology, we study opinion formation using a…

Physics and Society · Physics 2026-05-19 Tim Mauch , Thilo Gross

As a result of climate change, many populations have to modify their range to follow the suitable areas - their "climate envelope" - often risking extinction. During this migration process, they may face absolute boundaries to dispersal,…

Analysis of PDEs · Mathematics 2009-07-07 Lionel Roques , Alain Roques , Henri Berestycki , André Kretzschmar

Autonomous individuals establish a structural complex system through pairwise connections and interactions. Notably, the evolution reflects the dynamic nature of each complex system since it recodes a series of temporal changes from the…

Machine Learning · Computer Science 2023-06-27 Xue Liu , Dan Sun , Wei Wei , Zhiming Zheng

Many biological, geophysical and technological systems involve the transport of resource over a network. In this paper we present an algorithm for calculating the exact concentration of resource at any point in space or time, given that the…

Tissues and Organs · Quantitative Biology 2013-05-30 Luke L. M. Heaton , Eduardo Lopez , Philip K. Maini , Mark D. Fricker , Nick S. Jones

The multilayer network framework has served to describe and uncover a number of novel and unforeseen physical behaviors and regimes in interacting complex systems. However, the majority of existing studies are built on undirected multilayer…

Physics and Society · Physics 2020-11-03 Xiangrong Wang , Alejandro Tejedor , Yi Wang , Yamir Moreno

Mechanisms of pattern formation---of which the Turing instability is an archetype---constitute an important class of dynamical processes occurring in biological, ecological and chemical systems. Recently, it has been shown that the Turing…

Disordered Systems and Neural Networks · Physics 2019-06-19 Sayat Mimar , Mariamo Mussa Juane , Juyong Park , Alberto P. Munuzuri , Gourab Ghoshal