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We introduce structured decompositions, category-theoretic structures which simultaneously generalize notions from graph theory (including treewidth, layered treewidth, co-treewidth, graph decomposition width, tree independence number,…

Category Theory · Mathematics 2025-05-21 Benjamin Merlin Bumpus , Zoltan A. Kocsis , Jade Edenstar Master , Emilio Minichiello

Most semantic parsers that map sentences to graph-based meaning representations are hand-designed for specific graphbanks. We present a compositional neural semantic parser which achieves, for the first time, competitive accuracies across a…

Computation and Language · Computer Science 2019-07-16 Matthias Lindemann , Jonas Groschwitz , Alexander Koller

We develop a diagrammatic proof system for a fragment of structural semantics inspired by the Greimas semiotic square, using spider diagrams as the underlying formalism. The basic terms are represented as diagrammatic configurations, and…

Logic in Computer Science · Computer Science 2026-05-08 Michael Fowler

Graph neural networks (GNNs) are a type of neural model that tackle graphical tasks in an end-to-end manner. Recently, GNNs have been receiving increased attention in machine learning and data mining communities because of the higher…

Machine Learning · Computer Science 2023-02-07 Ayato Toyokuni , Makoto Yamada

Probability theory can be studied synthetically as the computational effect embodied by a commutative monad. In the recently proposed Markov categories, one works with an abstraction of the Kleisli category and then defines deterministic…

Logic in Computer Science · Computer Science 2022-12-06 Sean Moss , Paolo Perrone

This short paper examines diagrams describing neural network systems in academic conference proceedings. Many aspects of scholarly communication are controlled, particularly with relation to text and formatting, but often diagrams are not…

Human-Computer Interaction · Computer Science 2021-05-03 Guy Clarke Marshall , Caroline Jay , Andre Freitas

A framework and method are proposed for the study of constituent composition in fMRI. The method produces estimates of neural patterns encoding complex linguistic structures, under the assumption that the contributions of individual…

Computation and Language · Computer Science 2021-10-26 Matthias Lalisse , Paul Smolensky

Pebble games are a powerful tool in the study of finite model theory, constraint satisfaction and database theory. Monads and comonads are basic notions of category theory which are widely used in semantics of computation and in modern…

Logic in Computer Science · Computer Science 2017-04-19 Samson Abramsky , Anuj Dawar , Pengming Wang

Let $\mathcal C$ be a category with finite colimits, and let $(\mathcal E,\mathcal M)$ be a factorisation system on $\mathcal C$ with $\mathcal M$ stable under pushouts. Writing $\mathcal C;\mathcal M^{\mathrm{op}}$ for the symmetric…

Category Theory · Mathematics 2017-03-30 Brendan Fong

Multirelations provide a semantic domain for computing systems that involve two dual kinds of nondeterminism. This paper presents relational formalisations of Kleisli, Parikh and Peleg compositions and liftings of multirelations. These…

Logic in Computer Science · Computer Science 2017-05-17 Hitoshi Furusawa , Yasuo Kawahara , Georg Struth , Norihiro Tsumagari

Recursive Neural Network (RecNN), a type of models which compose words or phrases recursively over syntactic tree structures, has been proven to have superior ability to obtain sentence representation for a variety of NLP tasks. However,…

Computation and Language · Computer Science 2018-08-22 Gehui Shen , Zhi-Hong Deng , Ting Huang , Xi Chen

We study a family of distributors-induced bicategorical models of lambda-calculus, proving that they can be syntactically presented via intersection type systems. We first introduce a class of 2-monads whose algebras are monoidal categories…

Logic in Computer Science · Computer Science 2021-05-06 Federico Olimpieri

In categorical realizability, it is common to construct categories of assemblies and categories of modest sets from applicative structures. These categories have structures corresponding to the structures of applicative structures. In the…

Logic in Computer Science · Computer Science 2023-07-11 Haruka Tomita

String diagrams are a graphical language used to represent processes that can be composed sequentially or in parallel, which correspond graphically to horizontal or vertical juxtaposition. In this paper we demonstrate how to compute the…

Category Theory · Mathematics 2024-04-04 Celia Rubio-Madrigal , Jules Hedges

Membrane particles such as proteins and lipids organize into zones that perform unique functions. Here, I introduce a topological and category-theoretic framework to represent particle and zone intra-scale interactions and inter-scale…

Molecular Networks · Quantitative Biology 2026-01-01 Troy A. Kervin

The stochastic interpretation of Parikh's game logic should not follow the usual pattern of Kripke models, which in turn are based on the Kleisli morphisms for the Giry monad, rather, a specific and more general approach to probabilistic…

Logic in Computer Science · Computer Science 2017-01-03 Ernst-Erich Doberkat

We introduce a category-theoreticabstraction of a syntax with auxiliary functions, called an admissiblemonad morphism. Relying on an abstract form of structural recursion,we then design generic tools to construct admissible monad…

Logic in Computer Science · Computer Science 2022-04-11 Tom Hirschowitz , Ambroise Lafont

The mathematical formalisms used to model biological systems induce both latent and ambiguous assumptions that can limit or distort their representational capabilities. Developing formalisms that can represent systems more precisely is…

Quantitative Methods · Quantitative Biology 2026-05-25 Léo Diaz , Sean T. Vittadello , Michael P. H. Stumpf

A central goal for mechanistic interpretability has been to identify the right units of analysis in large language models (LLMs) that causally explain their outputs. While early work focused on individual neurons, evidence that neurons…

Computation and Language · Computer Science 2026-05-05 Or Shafran , Atticus Geiger , Mor Geva

We use monads to relax the atomicity requirement for data in a database. Depending on the choice of monad, the database fields may contain generalized values such as lists or sets of values, or they may contain exceptions such as various…

Databases · Computer Science 2012-09-06 David I. Spivak