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Diffusion language models (DLMs) have emerged as a promising alternative to autoregressive (AR) generation, yet their reliance on Transformer backbones limits inference efficiency due to quadratic attention or KV-cache overhead. We…

Machine Learning · Computer Science 2026-03-02 Vaibhav Singh , Oleksiy Ostapenko , Pierre-André Noël , Eugene Belilovsky , Torsten Scholak

Fine-tuning Large Language Models (LLMs) with multimodal encoders on modality-specific data expands the modalities that LLMs can handle, leading to the formation of Multimodal LLMs (MLLMs). However, this paradigm heavily relies on…

Computation and Language · Computer Science 2025-05-26 Junlin Li , Guodong DU , Jing Li , Sim Kuan Goh , Wenya Wang , Yequan Wang , Fangming Liu , Ho-Kin Tang , Saleh Alharbi , Daojing He , Min Zhang

Multimodal Large Language Models (MLLMs) have attracted much attention for their multifunctionality. However, traditional Transformer architectures incur significant overhead due to their secondary computational complexity. To address this…

Computer Vision and Pattern Recognition · Computer Science 2024-08-22 Wenjun Huang , Jiakai Pan , Jiahao Tang , Yanyu Ding , Yifei Xing , Yuhe Wang , Zhengzhuo Wang , Jianguo Hu

Although great progress has been made by previous table understanding methods including recent approaches based on large language models (LLMs), they rely heavily on the premise that given tables must be converted into a certain text…

Computation and Language · Computer Science 2024-06-13 Mingyu Zheng , Xinwei Feng , Qingyi Si , Qiaoqiao She , Zheng Lin , Wenbin Jiang , Weiping Wang

Masked Diffusion Language Models (MDLMs) have recently emerged as a promising alternative to Autoregressive Language Models (ARLMs), leveraging a denoising objective that, in principle, should enable more uniform context utilisation. In…

Machine Learning · Computer Science 2025-11-27 Julianna Piskorz , Cristina Pinneri , Alvaro Correia , Motasem Alfarra , Risheek Garrepalli , Christos Louizos

Recent advancements in computational chemistry have leveraged the power of trans-former-based language models, such as MoLFormer, pre-trained using a vast amount of simplified molecular-input line-entry system (SMILES) sequences, to…

Biomolecules · Quantitative Biology 2024-11-05 Tianhao Peng , Yuchen Li , Xuhong Li , Jiang Bian , Zeke Xie , Ning Sui , Shahid Mumtaz , Yanwu Xu , Linghe Kong , Haoyi Xiong

Large Language Models (LLMs) have demonstrated substantial efficacy in advancing graph-structured data analysis. Prevailing LLM-based graph methods excel in adapting LLMs to text-rich graphs, wherein node attributes are text descriptions.…

Artificial Intelligence · Computer Science 2025-06-04 Dongzhe Fan , Yi Fang , Jiajin Liu , Djellel Difallah , Qiaoyu Tan

Understanding and designing biomolecules, such as proteins and small molecules, is central to advancing drug discovery, synthetic biology and enzyme engineering. Recent breakthroughs in artificial intelligence have revolutionized…

Computation and Language · Computer Science 2025-07-28 Xiang Zhuang , Keyan Ding , Tianwen Lyu , Yinuo Jiang , Xiaotong Li , Zhuoyi Xiang , Zeyuan Wang , Ming Qin , Kehua Feng , Jike Wang , Qiang Zhang , Huajun Chen

Multimodal large language models (MLLMs) have seen substantial progress in recent years. However, their ability to represent multimodal information in the acoustic domain remains underexplored. In this work, we introduce Vela, a novel…

Information Retrieval · Computer Science 2025-06-18 Ruofan Hu , Yan Xia , Minjie Hong , Jieming Zhu , Bo Chen , Xiaoda Yang , Minghui Fang , Tao Jin

Rapid advancements in imaging techniques and analytical methods over the past decade have revolutionized our ability to comprehensively probe the biological world at multiple scales, pinpointing the type, quantity, location, and even…

Artificial Intelligence · Computer Science 2025-10-02 Shanghang Zhang , Gaole Dai , Tiejun Huang , Jianxu Chen

Recent vision-language pre-training models have exhibited remarkable generalization ability in zero-shot recognition tasks. Previous open-vocabulary 3D scene understanding methods mostly focus on training 3D models using either image or…

Computer Vision and Pattern Recognition · Computer Science 2024-07-16 Ruihuang Li , Zhengqiang Zhang , Chenhang He , Zhiyuan Ma , Vishal M. Patel , Lei Zhang

Sequential recommendation (SR) systems have evolved significantly over the past decade, transitioning from traditional collaborative filtering to deep learning approaches and, more recently, to large language models (LLMs). While the…

Information Retrieval · Computer Science 2024-12-31 Yucong Luo , Qitao Qin , Hao Zhang , Mingyue Cheng , Ruiran Yan , Kefan Wang , Jie Ouyang

Accurate molecular property prediction (MPP) is a critical step in modern drug development. However, the scarcity of experimental validation data poses a significant challenge to AI-driven research paradigms. Under few-shot learning…

Machine Learning · Computer Science 2025-05-20 Yifan Dai , Xuanbai Ren , Tengfei Ma , Qipeng Yan , Yiping Liu , Yuansheng Liu , Xiangxiang Zeng

Recent Speech Large Language Models~(LLMs) have achieved impressive capabilities in end-to-end speech interaction. However, the prevailing autoregressive paradigm imposes strict serial constraints, limiting generation efficiency and…

Computation and Language · Computer Science 2026-02-10 Ziyang Cheng , Yuhao Wang , Heyang Liu , Ronghua Wu , Qunshan Gu , Yanfeng Wang , Yu Wang

Multimodal large language models (MLLMs) have made impressive progress in many applications in recent years. However, chemical MLLMs that can handle cross-modal understanding and generation remain underexplored. To fill this gap, we propose…

Machine Learning · Computer Science 2025-08-05 Qian Tan , Dongzhan Zhou , Peng Xia , Wanhao Liu , Wanli Ouyang , Lei Bai , Yuqiang Li , Tianfan Fu

Multimodal representation learning has shown promising improvements on various vision-language tasks. Most existing methods excel at building global-level alignment between vision and language while lacking effective fine-grained image-text…

Computer Vision and Pattern Recognition · Computer Science 2023-06-16 Zijia Zhao , Longteng Guo , Xingjian He , Shuai Shao , Zehuan Yuan , Jing Liu

While diffusion models excel at generating high-quality images, prior work reports a significant performance gap between diffusion and autoregressive (AR) methods in language modeling. In this work, we show that simple masked discrete…

Multimodal Large Language Models (MLLMs) have achieved remarkable success across diverse vision-language tasks, yet their internal decision-making mechanisms remain insufficiently understood. Existing interpretability research has primarily…

Computer Vision and Pattern Recognition · Computer Science 2025-10-02 Jiawei Liang , Ruoyu Chen , Xianghao Jiao , Siyuan Liang , Shiming Liu , Qunli Zhang , Zheng Hu , Xiaochun Cao

Microwell microfluidics has been utilized for single-cell analysis to reveal heterogeneity in gene expression, signaling pathways, and phenotypic responses for identifying rare cell types, understanding disease progression, and developing…

Neurons and Cognition · Quantitative Biology 2025-10-17 Dinh-Nguyen Nguyen , Sadia Shakil , Raymond Kai-Yu Tong , Ngoc-Duy Dinh

Masked Diffusion Models (MDMs) provide an efficient non-causal alternative to autoregressive generation but often struggle with token dependencies and semantic incoherence due to their reliance on discrete marginal distributions. We address…

Computation and Language · Computer Science 2026-04-20 Roy Uziel , Omer Belhasin , Itay Levy , Akhiad Bercovich , Ran El-Yaniv , Ran Zilberstein , Michael Elad