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Related papers: Fine-tuning DeepSeek-OCR-2 for Molecular Structure…

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Optical Chemical Structure Recognition (OCSR) plays a pivotal role in modern chemical informatics, enabling the automated conversion of chemical structure images from scientific literature, patents, and educational materials into…

Computer Vision and Pattern Recognition · Computer Science 2025-11-24 Wenrui Zhang , Xinggang Wang , Bin Feng , Wenyu Liu

Understanding the chemical structure from a graphical representation of a molecule is a challenging image caption task that would greatly benefit molecule-centric scientific discovery. Variations in molecular images and caption subtasks…

Computer Vision and Pattern Recognition · Computer Science 2025-05-23 Siqi Fan , Yuguang Xie , Bowen Cai , Ailin Xie , Gaochao Liu , Mu Qiao , Jie Xing , Zaiqing Nie

In the field of chemical structure recognition, the task of converting molecular images into machine-readable data formats such as SMILES string stands as a significant challenge, primarily due to the varied drawing styles and conventions…

Computer Vision and Pattern Recognition · Computer Science 2025-03-12 Yufan Chen , Ching Ting Leung , Yong Huang , Jianwei Sun , Hao Chen , Hanyu Gao

Molecular structures are always depicted as 2D printed form in scientific documents like journal papers and patents. However, these 2D depictions are not machine-readable. Due to a backlog of decades and an increasing amount of these…

Computer Vision and Pattern Recognition · Computer Science 2022-05-24 Youjun Xu , Jinchuan Xiao , Chia-Han Chou , Jianhang Zhang , Jintao Zhu , Qiwan Hu , Hemin Li , Ningsheng Han , Bingyu Liu , Shuaipeng Zhang , Jinyu Han , Zhen Zhang , Shuhao Zhang , Weilin Zhang , Luhua Lai , Jianfeng Pei

Optical chemical structure recognition (OCSR) translates molecular images into machine-readable representations like SMILES strings or molecular graphs, but remains challenging in real-world documents due to inexhaustible variations in…

Computer Vision and Pattern Recognition · Computer Science 2026-04-28 Zhuoqi Lyu , Qing Ke

Optical Chemical Structure Recognition (OCSR) is essential for converting molecular images into machine-readable formats. While recent vision-language models (VLMs) have shown promise, their image-captioning approach often struggles with…

Artificial Intelligence · Computer Science 2026-01-14 Jingchao Wang , Yifan He , Haote Yang , Jiang Wu , Lingli Ge , Xingjian Wei , Yinfan Wang , Linye Li , Huijie Ao , Chengjin Liu , Bin Wang , Lijun Wu , Conghui He

We present DeepSeek-OCR as an initial investigation into the feasibility of compressing long contexts via optical 2D mapping. DeepSeek-OCR consists of two components: DeepEncoder and DeepSeek3B-MoE-A570M as the decoder. Specifically,…

Computer Vision and Pattern Recognition · Computer Science 2025-10-22 Haoran Wei , Yaofeng Sun , Yukun Li

While OCR has been used in various applications, its output is not always accurate, leading to misfit words. This research work focuses on improving the optical character recognition (OCR) with ML techniques with integration of OCR with…

Computer Vision and Pattern Recognition · Computer Science 2023-04-18 Abhishek Bamotra , Phani Krishna Uppala

In recent decades, chemistry publications and patents have increased rapidly. A significant portion of key information is embedded in molecular structure figures, complicating large-scale literature searches and limiting the application of…

Computer Vision and Pattern Recognition · Computer Science 2025-09-22 Xi Fang , Jiankun Wang , Xiaochen Cai , Shangqian Chen , Shuwen Yang , Haoyi Tao , Nan Wang , Lin Yao , Linfeng Zhang , Guolin Ke

The crucial field of Optical Chemical Structure Recognition (OCSR) aims to transform chemical structure photographs into machine-readable formats so that chemical databases may be efficiently stored and queried. Although a number of OCSR…

Machine Learning · Computer Science 2025-02-25 Zishuo Lin , Jiajie Wang , Zhe Yan , Peiyong Ma

DeepSeek-OCR utilizes an optical 2D mapping approach to achieve high-ratio vision-text compression, claiming to decode text tokens exceeding ten times the input visual tokens. While this suggests a promising solution for the LLM…

Computation and Language · Computer Science 2026-01-09 Yunhao Liang , Ruixuan Ying , Bo Li , Hong Li , Kai Yan , Qingwen Li , Min Yang , Okamoto Satoshi , Zhe Cui , Shiwen Ni

Optical chemical structure recognition (OCSR) systems aim to extract the molecular structure information, usually in the form of molecular graph or SMILES, from images of chemical molecules. While many tools have been developed for this…

Computer Vision and Pattern Recognition · Computer Science 2024-07-29 Ching Ting Leung , Yufan Chen , Hanyu Gao

We present DeepSeek-OCR 2 to investigate the feasibility of a novel encoder-DeepEncoder V2-capable of dynamically reordering visual tokens upon image semantics. Conventional vision-language models (VLMs) invariably process visual tokens in…

Computer Vision and Pattern Recognition · Computer Science 2026-01-29 Haoran Wei , Yaofeng Sun , Yukun Li

Optical Chemical Structure Recognition (OCSR) aims to translate molecular diagrams in scientific literature into machine-readable formats, but current systems remain unreliable on real-world images due to substantial visual and chemical…

Identifying the chemical structure from a graphical representation, or image, of a molecule is a challenging pattern recognition task that would greatly benefit drug development. Yet, existing methods for chemical structure recognition do…

Computer Vision and Pattern Recognition · Computer Science 2024-04-03 Martijn Oldenhof , Edward De Brouwer , Adam Arany , Yves Moreau

DeepSeek-OCR leverages visual-text compression to reduce long-text processing costs and accelerate inference, yet visual tokens remain prone to redundant textual and structural information. Moreover, current token pruning methods for…

Computer Vision and Pattern Recognition · Computer Science 2026-05-22 Ben Wan , Yan Feng , Zihan Tang , Weizhe Huang , Yuting Zeng , Jia Wang , Tongxuan Liu

Conventional optical character recognition (OCR) techniques segmented each character and then recognized. This made them prone to error in character segmentation, and devoid of context to exploit language models. Advances in sequence to…

Computer Vision and Pattern Recognition · Computer Science 2025-09-01 Shashank Vempati , Nishit Anand , Gaurav Talebailkar , Arpan Garai , Chetan Arora

Optical character recognition (OCR) and multilingual text understanding remain major failure modes of multimodal large language models (MLLMs), particularly in real-world images containing cluttered layouts, small fonts, blur, occlusion,…

Computer Vision and Pattern Recognition · Computer Science 2026-05-26 Qinwu Xu , Yifan Jiang , Haoyu Ren

Occlusion in face recognition is a common yet challenging problem. While sparse representation based classification (SRC) has been shown promising performance in laboratory conditions (i.e. noiseless or random pixel corrupted), it performs…

Computer Vision and Pattern Recognition · Computer Science 2015-07-28 Yandong Wen , Weiyang Liu , Meng Yang , Yuli Fu , Youjun Xiang , Rui Hu

Chemical structure extraction from documents remains a hard problem due to both false positive identification of structures during segmentation and errors in the predicted structures. Current approaches rely on handcrafted rules and…

Machine Learning · Computer Science 2018-02-15 Joshua Staker , Kyle Marshall , Robert Abel , Carolyn McQuaw
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