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The mechanisms responsible for contention of activity in systems represented by networks are crucial in various phenomena, as in diseases such as epilepsy that affects the neuronal networks, and for information dissemination in social…

Biological Physics · Physics 2013-02-20 Diego R. Amancio , Osvaldo N. Oliveira , Luciano da F. Costa

Hierarchically modular organization is a canonical network topology that is evolutionarily conserved in the nervous systems of animals. Within the network, neurons form directional connections defined by the growth of their axonal…

Neurons and Cognition · Quantitative Biology 2024-04-26 Nobuaki Monma , Hideaki Yamamoto , Naoya Fujiwara , Hakuba Murota , Satoshi Moriya , Ayumi Hirano-Iwata , Shigeo Sato

Neuromorphic computing is a brainlike information processing paradigm that requires adaptive learning mechanisms. A spiking neuro-evolutionary system is used for this purpose; plastic resistive memories are implemented as synapses in…

Neural and Evolutionary Computing · Computer Science 2015-05-19 Gerard David Howard , Larry Bull , Ben de Lacy Costello , Andrew Adamatzky , Ella Gale

To learn useful dynamics on long time scales, neurons must use plasticity rules that account for long-term, circuit-wide effects of synaptic changes. In other words, neural circuits must solve a credit assignment problem to appropriately…

Neurons and Cognition · Quantitative Biology 2019-05-30 Owen Marschall , Kyunghyun Cho , Cristina Savin

The exploration of brain networks has reached an important milestone as relatively large and reliable information has been gathered for connectomes of different species. Analyses of connectome data sets reveal that the structural length and…

Biological Physics · Physics 2025-04-03 Michelle T. Cirunay , Rene C. Batac , Géza Odór

Associative memory or content addressable memory is an important component function in computer science and information processing and is a key concept in cognitive and computational brain science. Many different neural network…

Neural and Evolutionary Computing · Computer Science 2025-02-19 Anders Lansner , Naresh B Ravichandran , Pawel Herman

Understanding how recurrent neural circuits can learn to implement dynamical systems is a fundamental challenge in neuroscience. The credit assignment problem, i.e. determining the local contribution of each synapse to the network's global…

Neurons and Cognition · Quantitative Biology 2017-08-08 Alireza Alemi , Christian Machens , Sophie Denève , Jean-Jacques Slotine

Recurrent neural networks are frequently studied in terms of their information-processing capabilities. The structural properties of these networks are seldom considered, beyond those emerging from the connectivity tuning necessary for…

Molecular Networks · Quantitative Biology 2025-02-20 Maria Sol Vidal-Saez , Jordi Garcia-Ojalvo

The co-evolution of network topology and dynamics is studied in an evolutionary Boolean network model that is a simple model of gene regulatory network. We find that a critical state emerges spontaneously resulting from interplay between…

Statistical Mechanics · Physics 2007-05-23 Min Liu , Kevin E. Bassler

We consider a fully-connected network of leaky integrate-and-fire neurons with spike-timing-dependent plasticity. The plasticity is controlled by a parameter representing the expected weight of a synapse between neurons that are firing…

Neurons and Cognition · Quantitative Biology 2011-09-23 Chun-Chung Chen , David Jasnow

It is often the case that the performance of a neural network can be improved by adding layers. In real-world practices, we always train dozens of neural network architectures in parallel which is a wasteful process. We explored $CompNet$,…

Neural and Evolutionary Computing · Computer Science 2018-04-30 Jun Lu , Wei Ma , Boi Faltings

Cultured stem cells have become a standard platform not only for regenerative medicine and developmental biology but also for biophysical studies. Yet, the characterization of cultured stem cells at the level of morphology and macroscopic…

Soft Condensed Matter · Physics 2022-06-23 Kyogo Kawaguchi , Ryoichiro Kageyama , Masaki Sano

We model the robustness against random failure or intentional attack of networks with arbitrary large-scale structure. We construct a block-based model which incorporates --- in a general fashion --- both connectivity and interdependence…

Physics and Society · Physics 2012-09-25 Tiago P. Peixoto , Stefan Bornholdt

An established normative approach for understanding the algorithmic basis of neural computation is to derive online algorithms from principled computational objectives and evaluate their compatibility with anatomical and physiological…

Neurons and Cognition · Quantitative Biology 2023-08-04 David Lipshutz , Yanis Bahroun , Siavash Golkar , Anirvan M. Sengupta , Dmitri B. Chklovskii

In this work we study a Hebbian neural network, where neurons are arranged according to a hierarchical architecture such that their couplings scale with their reciprocal distance. As a full statistical mechanics solution is not yet…

Disordered Systems and Neural Networks · Physics 2016-01-26 Elena Agliari , Adriano Barra , Andrea Galluzzi , Francesco Guerra , Daniele Tantari , Flavia Tavani

Many real-world networks are directed, sparse and hierarchical, with a mixture of feed-forward and feedback connections with respect to the hierarchy. Moreover, a small number of 'master' nodes are often able to drive the whole system. We…

Disordered Systems and Neural Networks · Physics 2022-06-22 Niall Rodgers , Peter Tino , Samuel Johnson

Growing graphs describe a multitude of developing processes from maturing brains to expanding vocabularies to burgeoning public transit systems. Each of these growing processes likely adheres to proliferation rules that establish an…

Quantitative Methods · Quantitative Biology 2020-05-27 Ann Sizemore Blevins , Danielle S. Bassett

Generating functionals may guide the evolution of a dynamical system and constitute a possible route for handling the complexity of neural networks as relevant for computational intelligence. We propose and explore a new objective function,…

Neurons and Cognition · Quantitative Biology 2017-11-27 Rodrigo Echeveste , Claudius Gros

The free energy principle casts perception as variational inference, but its biological implementation remains underspecified. In particular, the generalized-coordinate formalism should not be read as a literal claim that neurons compute…

Neurons and Cognition · Quantitative Biology 2026-05-07 Vikas N. O'Reilly-Shah

Cortical circuits are characterized by exquisitely complex connectivity patterns that emerge during development from undifferentiated networks. The development of these circuits is governed by a combination of precise molecular cues that…

Neurons and Cognition · Quantitative Biology 2020-09-15 Joseph Olson , Gabriel Kreiman
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