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Related papers: OntoKG: Ontology-Oriented Knowledge Graph Construc…

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Large Language Models (LLMs), despite their success in question answering, exhibit limitations in complex multi-hop question answering (MQA) tasks that necessitate non-linear, structured reasoning. This limitation stems from their inability…

Computation and Language · Computer Science 2025-09-25 Haonan Bian , Yutao Qi , Rui Yang , Yuanxi Che , Jiaqian Wang , Heming Xia , Ranran Zhen

We propose a novel framework to facilitate the on-demand design of data-centric systems by exploiting domain knowledge from an existing ontology. Its key ingredient is a process that we call focusing, which allows to obtain a schema for a…

Logic in Computer Science · Computer Science 2019-04-02 Tomasz Gogacz , Víctor Gutiérrez-Basulto , Yazmín A. Ibáñez-García , Filip Murlak , Magdalena Ortiz , Mantas Šimkus

Knowledge graph embedding (KGE) is a technique that enhances knowledge graphs by addressing incompleteness and improving knowledge retrieval. A limitation of the existing KGE models is their underutilization of ontologies, specifically the…

Social and Information Networks · Computer Science 2025-04-07 Takanori Ugai

Knowledge graphs (KGs) are a powerful approach for integrating heterogeneous data and making inferences in biology and many other domains, but a coherent solution for constructing, exchanging, and facilitating the downstream use of…

Biomedical ontologies, which comprehensively define concepts and relations for biomedical entities, are crucial for structuring and formalizing domain-specific information representations. Biomedical code mapping identifies similarity or…

Information Retrieval · Computer Science 2025-02-27 Hui Feng , Yuntzu Yin , Emiliano Reynares , Jay Nanavati

Generating Knowledge Graphs (KGs) remains one of the most time-consuming and labor-intensive tasks for knowledge engineers, as they need to identify semantic equivalences between input data sources and ontology terms. While declarative…

Artificial Intelligence · Computer Science 2026-05-20 Carla Castedo , Enrique Iglesias , Manuel Lama , Alberto Bugarin-Diz , Maria-Esther Vidal , David Chaves-Fraga

The "RNA world" represents a novel frontier for the study of fundamental biological processes and human diseases and is paving the way for the development of new drugs tailored to the patient's biomolecular characteristics. Although…

Schemas play a vital role in ensuring data quality and supporting usability in the Semantic Web and natural language processing. Traditionally, their creation demands substantial involvement from knowledge engineers and domain experts.…

Artificial Intelligence · Computer Science 2025-10-03 Bohui Zhang , Yuan He , Lydia Pintscher , Albert Meroño Peñuela , Elena Simperl

Knowledge Graphs (KGs) are increasingly used to represent and explore complex, interconnected data across diverse domains. However, existing KG visualization systems remain limited because they fail to provide the context of user questions.…

Human-Computer Interaction · Computer Science 2026-04-14 Rumali Perera , Xiaoqi Wang , Han-wei Shen

As generative models become powerful, concerns around transparency, accountability, and copyright violations have intensified. Understanding how specific training data contributes to a model's output is critical. We introduce a framework…

Artificial Intelligence · Computer Science 2025-12-03 Theodoros Aivalis , Iraklis A. Klampanos , Antonis Troumpoukis , Joemon M. Jose

Existing domain-specific Large Language Models (LLMs) are typically developed by fine-tuning general-purposed LLMs with large-scale domain-specific corpora. However, training on large-scale corpora often fails to effectively organize domain…

Computation and Language · Computer Science 2025-02-11 Zhiqiang Liu , Chengtao Gan , Junjie Wang , Yichi Zhang , Zhongpu Bo , Mengshu Sun , Huajun Chen , Wen Zhang

Medical ontology graphs map external knowledge to medical codes in electronic health records via structured relationships. By leveraging domain-approved connections (e.g., parent-child), predictive models can generate richer medical concept…

Artificial Intelligence · Computer Science 2025-09-01 Mohsen Nayebi Kerdabadi , Arya Hadizadeh Moghaddam , Dongjie Wang , Zijun Yao

Taking advantage of the widespread use of ontologies to organise and harmonize knowledge across several distinct domains, this paper proposes a novel approach to improve an embedding-Large Language Model (embedding-LLM) of interest by…

Computation and Language · Computer Science 2024-06-03 Francesco Ronzano , Jay Nanavati

This paper presents an exhaustive quantitative and qualitative evaluation of Large Language Models (LLMs) for Knowledge Graph (KG) construction and reasoning. We engage in experiments across eight diverse datasets, focusing on four…

Computation and Language · Computer Science 2024-12-30 Yuqi Zhu , Xiaohan Wang , Jing Chen , Shuofei Qiao , Yixin Ou , Yunzhi Yao , Shumin Deng , Huajun Chen , Ningyu Zhang

System engineering has been shifting from document-centric to model-based approaches, where assets are becoming more and more digital. Although digitisation conveys several benefits, it also brings several concerns (e.g., storage and…

Software Engineering · Computer Science 2025-12-11 Arkadiusz Ryś , Lucas Lima , Joeri Exelmans , Dennis Janssens , Hans Vangheluwe

Large Language Models (LLMs) excel at generating natural language answers, yet their outputs often remain unverifiable and difficult to trace. Knowledge Graphs (KGs) offer a complementary strength by representing entities and their…

Computation and Language · Computer Science 2025-12-05 Alfonso Amayuelas , Joy Sain , Simerjot Kaur , Charese Smiley

Integrating structured knowledge from Knowledge Graphs (KGs) into Large Language Models (LLMs) remains a key challenge for symbolic reasoning. Existing methods mainly rely on prompt engineering or fine-tuning, which lose structural fidelity…

Machine Learning · Computer Science 2025-05-13 Erica Coppolillo

Proprietary workflow modeling languages such as Smart Forms & Smart Flow hamper interoperability and reuse because they lock process knowledge into closed formats. To address this vendor lock-in and ease migration to open standards, we…

Software Engineering · Computer Science 2025-11-18 Francisco Abreu , Luís Cruz , Sérgio Guerreiro

The reasoning process of Large Language Models (LLMs) is often plagued by hallucinations and missing facts in question-answering tasks. A promising solution is to ground LLMs' answers in verifiable knowledge sources, such as Knowledge…

Computation and Language · Computer Science 2026-02-26 Shiqi Yan , Yubo Chen , Ruiqi Zhou , Zhengxi Yao , Shuai Chen , Tianyi Zhang , Shijie Zhang , Wei Qiang Zhang , Yongfeng Huang , Haixin Duan , Yunqi Zhang

Leveraging generative Artificial Intelligence (AI), we have transformed a dataset comprising 1,000 scientific papers into an ontological knowledge graph. Through an in-depth structural analysis, we have calculated node degrees, identified…

Machine Learning · Computer Science 2024-06-12 Markus J. Buehler