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Suffix tree (and the closely related suffix array) are fundamental structures capturing all substrings of a given text essentially by storing all its suffixes in the lexicographical order. In some applications, we work with a subset of $b$…

Data Structures and Algorithms · Computer Science 2016-08-03 Paweł Gawrychowski , Tomasz Kociumaka

We present approximation algorithms for the following NP-hard optimization problems related to bottleneck spanning trees in metric spaces. 1. The disjoint bottleneck spanning tree problem: Given $n$ pairs of points in a metric space, find…

Computational Geometry · Computer Science 2021-11-11 Ahmad Biniaz , Anil Maheshwari , Michiel Smid

We present $O(\log^2 \log n)$ time 3-coloring, maximal independent set and maximal matching algorithms for trees in the Massively Parallel Computation (MPC) model. Our algorithms are deterministic, apply to arbitrary-degree trees and work…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-11-02 Rustam Latypov , Jara Uitto

The tree edit distance is a natural dissimilarity measure between rooted ordered trees whose nodes are labeled over an alphabet $\Sigma$. It is defined as the minimum number of node edits (insertions, deletions, and relabelings) required to…

Data Structures and Algorithms · Computer Science 2025-07-04 Tomasz Kociumaka , Ali Shahali

We show fast deterministic algorithms for fundamental problems on forests in the challenging low-space regime of the well-known Massive Parallel Computation (MPC) model. A recent breakthrough result by Coy and Czumaj [STOC'22] shows that,…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-11-08 Alkida Balliu , Rustam Latypov , Yannic Maus , Dennis Olivetti , Jara Uitto

In the decision tree computation model for Boolean functions, the depth corresponds to query complexity, and size corresponds to storage space. The depth measure is the most well-studied one, and is known to be polynomially related to…

Computational Complexity · Computer Science 2022-09-27 Yogesh Dahiya , Meena Mahajan

In the Directed Steiner Tree (DST) problem the input is a directed edge-weighted graph $G=(V,E)$, a root vertex $r$ and a set $S \subseteq V$ of $k$ terminals. The goal is to find a min-cost subgraph that connects $r$ to each of the…

Data Structures and Algorithms · Computer Science 2024-07-03 Chandra Chekuri , Rhea Jain , Shubhang Kulkarni , Da Wei Zheng , Weihao Zhu

We give an algorithm that computes a $(1+\epsilon)$-approximate Steiner forest in near-linear time $n \cdot 2^{(1/\epsilon)^{O(ddim^2)} (\log \log n)^2}$. This is a dramatic improvement upon the best previous result due to Chan et al., who…

Computational Geometry · Computer Science 2019-04-09 Lee-Ad Gottlieb , Yair Bartal

Weighted flow time is a fundamental and very well-studied objective function in scheduling. In this paper, we study the setting of a single machine with preemptions. The input consists of a set of jobs, characterized by their processing…

Data Structures and Algorithms · Computer Science 2020-11-12 Lars Rohwedder , Andreas Wiese

The palindromic tree (a.k.a. eertree) for a string $S$ of length $n$ is a tree-like data structure that represents the set of all distinct palindromic substrings of $S$, using $O(n)$ space [Rubinchik and Shur, 2018]. It is known that, when…

Data Structures and Algorithms · Computer Science 2020-11-12 Takuya Mieno , Kiichi Watanabe , Yuto Nakashima , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda

We give a new fpt algorithm testing isomorphism of $n$-vertex graphs of tree width $k$ in time $2^{k\operatorname{polylog} (k)}\operatorname{poly} (n)$, improving the fpt algorithm due to Lokshtanov, Pilipczuk, Pilipczuk, and Saurabh (FOCS…

Data Structures and Algorithms · Computer Science 2018-03-20 Martin Grohe , Daniel Neuen , Pascal Schweitzer , Daniel Wiebking

We connect the problem of properly PAC learning decision trees to the parameterized Nearest Codeword Problem ($k$-NCP). Despite significant effort by the respective communities, algorithmic progress on both problems has been stuck: the…

Computational Complexity · Computer Science 2024-09-27 Caleb Koch , Carmen Strassle , Li-Yang Tan

We design a new, fast algorithm for agnostically learning univariate probability distributions whose densities are well approximated by piecewise polynomial functions. Let $f$ be the density function of an arbitrary univariate distribution,…

Data Structures and Algorithms · Computer Science 2015-06-03 Jayadev Acharya , Ilias Diakonikolas , Jerry Li , Ludwig Schmidt

The (unweighted) tree edit distance problem for $n$ node trees asks to compute a measure of dissimilarity between two rooted trees with node labels. The current best algorithm from more than a decade ago runs in $O(n ^ 3)$ time [Demaine,…

Data Structures and Algorithms · Computer Science 2021-11-12 Xiao Mao

Let $P$ and $S$ be two disjoint sets of $n$ and $m$ points in the plane, respectively. We consider the problem of computing a Steiner tree whose Steiner vertices belong to $S$, in which each point of $P$ is a leaf, and whose longest edge…

Computational Geometry · Computer Science 2013-05-02 Ahmad Biniaz , Anil Maheshwari , Michiel Smid

We study two fundamental decremental dynamic graph problems. In both problems, we need to maintain a vertex-weighted forest of size $n$ under edge deletions, weight updates, and a certain information-retrieval query. Both problems can be…

Data Structures and Algorithms · Computer Science 2026-05-08 Benjamin Aram Berendsohn , Marek Sokołowski

We introduce a cluster evaluation technique called Tree Index. Our Tree Index algorithm aims at describing the structural information of the clustering rather than the quantitative format of cluster-quality indexes (where the representation…

Machine Learning · Computer Science 2020-03-25 A. H. Beg , Md Zahidul Islam , Vladimir Estivill-Castro

Given a set $P$ of $n$ points that are moving in the plane, we consider the problem of computing a spanning tree for these moving points that does not change its combinatorial structure during the point movement. The objective is to…

Computational Geometry · Computer Science 2022-06-28 Haitao Wang , Yiming Zhao

In this paper we study a polynomial time algorithms that for an input $A\subseteq {B_m}$ outputs a decision tree for $A$ of minimum depth. This problem has many applications that include, to name a few, computer vision, group testing, exact…

Data Structures and Algorithms · Computer Science 2018-02-02 Nader H. Bshouty , Waseem Makhoul

Motivated by a recent result of Elberfeld, Jakoby and Tantau showing that $\mathsf{MSO}$ properties are Logspace computable on graphs of bounded tree-width, we consider the complexity of computing the determinant of the adjacency matrix of…

Computational Complexity · Computer Science 2014-12-09 Nikhil Balaji , Samir Datta