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Goupil is a software library designed for the Monte Carlo transport of low-energy gamma-rays, such as those emitted from radioactive isotopes. The library is distributed as a Python module. It implements a dedicated backward sampling…

Computational Physics · Physics 2025-05-20 Valentin Niess , Kinson Vernet , Luca Terray

Accurate prediction of ionic conductivity in electrolyte systems is crucial for advancing numerous scientific and technological applications. While significant progress has been made, current research faces two fundamental challenges: (1)…

Machine Learning · Computer Science 2025-10-29 Anyi Li , Jiacheng Cen , Songyou Li , Mingze Li , Yang Yu , Wenbing Huang

Information on protein-protein interactions (PPIs) not only advances our understanding of molecular biology but also provides important clues for target selection in drug discovery and the design of PPI inhibitors. One of the techniques…

Biomolecules · Quantitative Biology 2021-05-11 Masahito Ohue , Yutaka Akiyama

As simulation system, the variety of physics processes implemented is one of the most important functionalities. In that sense, Geant4 is one of the most powerful simulation toolkits. Its flexibility and expansibility brought by…

Computational Physics · Physics 2007-05-23 K. Murakami , K. Amako , H. Hirayama , Y. Namito , T. Sasaki , M. Asai , T. Koi

\texttt{Mixture-Models} is an open-source Python library for fitting Gaussian Mixture Models (GMM) and their variants, such as Parsimonious GMMs, Mixture of Factor Analyzers, MClust models, Mixture of Student's t distributions, etc. It…

Computation · Statistics 2024-02-19 Siva Rajesh Kasa , Hu Yijie , Santhosh Kumar Kasa , Vaibhav Rajan

We present an application, Superplot, for calculating and plotting statistical quantities relevant to parameter inference from a "chain" of samples drawn from a parameter space, produced by e.g. MultiNest. A simple graphical interface…

Data Analysis, Statistics and Probability · Physics 2016-12-06 Andrew Fowlie , Michael Hugh Bardsley

pyGDM is a python toolkit for electro-dynamical simulations in nano-optics based on the Green Dyadic Method (GDM). In contrast to most other coupled-dipole codes, pyGDM uses a generalized propagator, which allows to cost-efficiently solve…

Computational Physics · Physics 2020-01-28 Peter R. Wiecha

We introduce geoplotlib, an open-source python toolbox for visualizing geographical data. geoplotlib supports the development of hardware-accelerated interactive visualizations in pure python, and provides implementations of dot maps,…

Graphics · Computer Science 2016-08-08 Andrea Cuttone , Sune Lehmann , Jakob Eg Larsen

A data logger is designed to monitor and record ambient parameters such as temperature, pressure and relative humidity along with gas flow rate as a function of time. These parameters are required for understanding the characteristics of…

Instrumentation and Detectors · Physics 2018-06-01 S. Swain , P. K. Sahu , S. Sahu

We present an IDL graphical user interface-driven software package designed for the analysis of extrasolar planet transit light curves. The Transit Analysis Package (TAP) software uses Markov Chain Monte Carlo (MCMC) techniques to fit light…

Earth and Planetary Astrophysics · Physics 2015-05-27 J. Zachary Gazak , John A. Johnson , John Tonry , Jason Eastman , Andrew W. Mann , Eric Agol

We introduce pyGSL, a Python library that provides efficient implementations of state-of-the-art graph structure learning models along with diverse datasets to evaluate them on. The implementations are written in GPU-friendly ways, allowing…

Machine Learning · Computer Science 2022-11-08 Max Wasserman , Gonzalo Mateos

An adequate education on power system operations and controls requires a hands-on experience on a graphical user interface (GUI) based software. At present, most commercial software do not have free editions with high flexibility and most…

Human-Computer Interaction · Computer Science 2020-09-01 Md Ashfaqur Rahman

Understanding how galaxies form and evolve requires measuring their light distributions in images taken by telescopes. This process often involves fitting mathematical models to galaxy images to extract properties such as size, brightness,…

Instrumentation and Methods for Astrophysics · Physics 2026-01-12 Christopher Añorve

To address the the problem of calibration of instrument systematics in transit light curves, we present the Python package ExoTiC-ISM. Transit spectroscopy can reveal many different chemical components in exoplanet atmospheres, but such…

Instrumentation and Methods for Astrophysics · Physics 2020-07-16 Iva Laginja , Hannah R. Wakeford

We present MOGPTK, a Python package for multi-channel data modelling using Gaussian processes (GP). The aim of this toolkit is to make multi-output GP (MOGP) models accessible to researchers, data scientists, and practitioners alike. MOGPTK…

Machine Learning · Statistics 2020-02-11 Taco de Wolff , Alejandro Cuevas , Felipe Tobar

We present TopoTB, a software package written in the Mathematica language, designed to compute electronic structures, topological properties, and phase diagrams based on tight-binding models. TopoTB is user-friendly, with an interactive…

Materials Science · Physics 2024-03-14 Xinliang Huang , Fawei Zheng , Ning Hao

In this manuscript, we will introduce a recently developed program GPView, which can be used for wave function analysis and visualization. The wave function analysis module can calculate and generate 3D cubes for various types of molecular…

Chemical Physics · Physics 2020-01-08 Tian Shi , Ping Wang

GMP-Featurizer is a lightweight, accurate, efficient, and scalable software package for calculating the Gaussian Multipole (GMP) features \cite{GMP} for a variety of atomic systems with elements across the periodic table. Starting from the…

Chemical Physics · Physics 2023-03-24 Xiangyun Lei , Joseph Montoya

A good understanding of electroluminescence is a prerequisite when optimising double-phase noble gas detectors for Dark Matter searches and high-pressure xenon TPCs for neutrinoless double beta decay detection. A simulation toolkit for…

Detailed radiation analysis of instruments flown in space is critical to ensure mission safety, often requiring the use of state-of-the-art particle transport simulation tools. Geant4 is one of the most powerful toolkits to simulate the…

Computational Physics · Physics 2019-03-29 Marco Pinto , Patrícia Gonçalves