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The European Materials and Modelling Ontology (EMMO) is a top-level ontology designed by the European Materials Modelling Council to facilitate semantic interoperability between platforms, models, and tools in computational molecular…

Computational Engineering, Finance, and Science · Computer Science 2020-01-14 Martin Thomas Horsch , Silvia Chiacchiera , Youness Bami , Georg J. Schmitz , Gabriele Mogni , Gerhard Goldbeck , Emanuele Ghedini

The Web of Data is an open environment consisting of a great number of large inter-linked RDF datasets from various domains. In this environment, organizations and companies adopt the Linked Data practices utilizing Semantic Web (SW)…

Despite the large number of patients in Electronic Health Records (EHRs), the subset of usable data for modeling outcomes of specific phenotypes are often imbalanced and of modest size. This can be attributed to the uneven coverage of…

Machine Learning · Computer Science 2021-03-25 Mohamed Ghalwash , Zijun Yao , Prithwish Chakraborty , James Codella , Daby Sow

Many ontologies have been developed in biology and these ontologies increasingly contain large volumes of formalized knowledge commonly expressed in the Web Ontology Language (OWL). Computational access to the knowledge contained within…

Databases · Computer Science 2015-02-02 Robert Hoehndorf , Luke Slater , Paul N. Schofield , Georgios V. Gkoutos

Ontology alignment, a critical process in the Semantic Web for detecting relationships between different ontologies, has traditionally focused on identifying so-called "simple" 1-to-1 relationships through class labels and properties…

Artificial Intelligence · Computer Science 2024-07-24 Reihaneh Amini , Sanaz Saki Norouzi , Pascal Hitzler , Reza Amini

The rapid advancement of Large Language Models (LLMs) has resulted in interest in their potential applications within manufacturing systems, particularly in the context of Industry 5.0. However, determining when to implement LLMs versus…

Human-Computer Interaction · Computer Science 2025-05-27 John Oyekan , Christopher Turner , Michael Bax , Erich Graf

Ontology matching (OM) enables semantic interoperability between different ontologies and resolves their conceptual heterogeneity by aligning related entities. OM systems currently have two prevailing design paradigms: conventional…

Artificial Intelligence · Computer Science 2026-03-10 Zhangcheng Qiang , Weiqing Wang , Kerry Taylor

Even though modern service-oriented and data-oriented architectures promise to deliver loosely coupled control systems, they are inherently brittle as they commonly depend on a priori agreed interfaces and data models. At the same time, the…

Instrumentation and Methods for Astrophysics · Physics 2013-10-22 Wim Pessemier , Gert Raskin , Hans Van Winckel , Geert Deconinck , Philippe Saey

The ontology engineering process is complex, time-consuming, and error-prone, even for experienced ontology engineers. In this work, we investigate the potential of Large Language Models (LLMs) to provide effective OWL ontology drafts…

This paper addresses the challenge of improving information retrieval from semi-structured eXtensible Markup Language (XML) documents. Traditional information retrieval systems (IRS) often overlook user-specific needs and return identical…

Information Retrieval · Computer Science 2026-03-24 Ounnaci Iddir , Ahmed-ouamer Rachid , Tai Dinh

The Distributed Ontology Language (DOL) is currently being standardized within the OntoIOp (Ontology Integration and Interoperability) activity of ISO/TC 37/SC 3. It aims at providing a unified framework for (1) ontologies formalized in…

Artificial Intelligence · Computer Science 2012-08-02 Christoph Lange , Till Mossakowski , Oliver Kutz , Christian Galinski , Michael Grüninger , Daniel Couto Vale

The following contribution introduces a concept that employs Large Language Models (LLMs) and a chatbot interface to enhance SPARQL query generation for ontologies, thereby facilitating intuitive access to formalized knowledge. Utilizing…

Information Retrieval · Computer Science 2024-10-18 Jonathan Reif , Tom Jeleniewski , Milapji Singh Gill , Felix Gehlhoff , Alexander Fay

AutomationML (AML) enables standardized data exchange in engineering, yet existing recommendations for proper AML modeling are typically formulated as informal and textual constraints. These constraints cannot be validated automatically…

Artificial Intelligence · Computer Science 2025-06-13 Tom Westermann , Aljosha Köcher , Felix Gehlhoff

The Multilingual Semantic Web has been in focus for over a decade. Multilingualism in Linked Data and RDF has shown substantial adoption, but this is unclear for ontologies since the last review 15 years ago. One of the design goals for OWL…

Artificial Intelligence · Computer Science 2022-10-07 Frances Gillis-Webber , C. Maria Keet

In this paper, we introduce OWLAPY, a comprehensive Python framework for OWL ontology engineering. OWLAPY streamlines the creation, modification, and serialization of OWL 2 ontologies. It uniquely integrates native Python-based reasoners…

Software Engineering · Computer Science 2025-11-12 Alkid Baci , Luke Friedrichs , Caglar Demir , Axel-Cyrille Ngonga Ngomo

This work presents the architecture used in the ongoing OntologyNavigator project. It is a research tool to help advanced learners to find adapted IT papers to create scientific bibliographies. The purpose is the use of an IT representation…

Information Retrieval · Computer Science 2012-02-07 Gérald Kembellec , Imad Saleh , Catherine Sauvaget

LLM watermarking, which embeds imperceptible yet algorithmically detectable signals in model outputs to identify LLM-generated text, has become crucial in mitigating the potential misuse of large language models. However, the abundance of…

Cryptography and Security · Computer Science 2024-10-29 Leyi Pan , Aiwei Liu , Zhiwei He , Zitian Gao , Xuandong Zhao , Yijian Lu , Binglin Zhou , Shuliang Liu , Xuming Hu , Lijie Wen , Irwin King , Philip S. Yu

Managing clinical trial information is currently a significant challenge for the medical industry, as traditional methods are both time-consuming and costly. This paper proposes a simple yet effective methodology to extract and integrate…

Artificial Intelligence · Computer Science 2024-12-20 Berkan Çakır

End users of recent biomedical information systems are often unaware of the storage structure and access mechanisms of the underlying data sources and can require simplified mechanisms for writing domain specific complex queries. This…

Databases · Computer Science 2008-12-16 Kamran Munir , Mohammed Odeh , Richard McClatchey

Taking advantage of the widespread use of ontologies to organise and harmonize knowledge across several distinct domains, this paper proposes a novel approach to improve an embedding-Large Language Model (embedding-LLM) of interest by…

Computation and Language · Computer Science 2024-06-03 Francesco Ronzano , Jay Nanavati