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The integration of Artificial Intelligence (AI) with High-Performance Computing (HPC) is transforming scientific workflows from human-directed pipelines into adaptive systems capable of autonomous decision-making. Large language models…

The Model Context Protocol (MCP) enables large language models to invoke external tools through natural-language descriptions, forming the foundation of many AI agent applications. However, MCP does not enforce consistency between…

Cryptography and Security · Computer Science 2026-02-04 Zhihao Li , Boyang Ma , Xuelong Dai , Minghui Xu , Yue Zhang , Biwei Yan , Kun Li

The Model Context Protocol (MCP) has emerged as a standard for connecting large language models (LLMs) with external tools. However, this MCP ecosystem introduces new security risks across hosts, servers, and registries. In this paper, we…

Cryptography and Security · Computer Science 2026-04-29 Xiaofan Li , Xing Gao

Large language models (LLMs) struggle to effectively utilize a growing number of external tools, such as those defined by the Model Context Protocol (MCP)\cite{IntroducingMCP}, due to prompt bloat and selection complexity. We introduce…

Artificial Intelligence · Computer Science 2025-05-07 Tiantian Gan , Qiyao Sun

The Model Context Protocol (MCP) (MCP Community, 2025) has emerged as a widely used framework for enabling LLM-based agents to communicate with external tools and services. The original MCP implementation (Anthropic, 2024) relies on a Large…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-26 Meenakshi Amulya Jayanti , X. Y. Han

The Model Context Protocol (MCP) standardizes tool use for LLM-based agents and enable third-party servers. This openness introduces a security misalignment: agents implicitly trust tools exposed by potentially untrusted MCP servers.…

Cryptography and Security · Computer Science 2026-02-25 Zhenhong Zhou , Yuanhe Zhang , Hongwei Cai , Moayad Aloqaily , Ouns Bouachir , Linsey Pang , Prakhar Mehrotra , Kun Wang , Qingsong Wen

Recent advances in LLM Multi-Agent Systems enable scalable orchestration of sub-agents, each coordinating hundreds or thousands of tools or Model Context Protocol (MCP) servers. However, existing retrieval methods typically match queries…

Computation and Language · Computer Science 2025-11-05 Elias Lumer , Faheem Nizar , Anmol Gulati , Pradeep Honaganahalli Basavaraju , Vamse Kumar Subbiah

To standardize interactions between LLM-based agents and their environments, the Model Context Protocol (MCP) was proposed and has since been widely adopted. However, integrating external tools expands the attack surface, exposing agents to…

Cryptography and Security · Computer Science 2026-01-13 Ruiqi Li , Zhiqiang Wang , Yunhao Yao , Xiang-Yang Li

LLM agents are rapidly evolving from coding assistants into autonomous software engineering systems. However, existing evaluation methodologies remain largely centered on static, isolated, and short-horizon benchmarks that fail to capture…

Software Engineering · Computer Science 2026-05-28 Yipeng Ouyang , Xin Huang , Bingjie Liu , Zhongchun Zheng , Yuhao Gu , Xianwei Zhang

Large language models (LLMs) are evolving into agentic systems that reason, plan, and operate external tools. The Model Context Protocol (MCP) is a key enabler of this transition, offering a standardized interface for connecting LLMs with…

Computation and Language · Computer Science 2026-03-06 Xuanjun Zong , Zhiqi Shen , Lei Wang , Yunshi Lan , Chao Yang

Today's AI agents are built on large language models (LLMs) equipped with tools to access and modify external environments, such as corporate file systems, API-accessible platforms and websites. AI agents offer the promise of automating…

Computers and Society · Computer Science 2026-03-26 Merlin Stein

The Model Context Protocol (MCP) replaces static, developer-controlled API integrations with more dynamic, user-driven agent systems, which also introduces new security risks. As MCP adoption grows across community servers and major…

Cryptography and Security · Computer Science 2025-11-27 Herman Errico , Jiquan Ngiam , Shanita Sojan

Model Context Protocols (MCPs) provide a unified platform for agent systems to discover, select, and orchestrate tools across heterogeneous execution environments. As MCP-based systems scale to incorporate larger tool catalogs and multiple…

Cryptography and Security · Computer Science 2026-02-19 Yuval Felendler , Parth A. Gandhi , Idan Habler , Yuval Elovici , Asaf Shabtai

Tool-using LLM agents increasingly coordinate real workloads by selecting and chaining third-party tools based on text-visible metadata such as tool names, descriptions, and return messages. We show that this convenience creates a…

Computation and Language · Computer Science 2026-02-17 Yohan Lee , Jisoo Jang , Seoyeon Choi , Sangyeop Kim , Seungtaek Choi

The Model Context Protocol (MCP) defines a schema bound execution model for agent-tool interaction, enabling modular computer vision workflows without retraining. To our knowledge, this is the first protocol level, deployment scale audit of…

Cryptography and Security · Computer Science 2025-09-30 Aditi Tiwari , Akshit Bhalla , Darshan Prasad

While Large Language Models (LLMs) have achieved remarkable performance, they remain vulnerable to jailbreak. The integration of Large Language Models (LLMs) with external tools via protocols such as the Model Context Protocol (MCP)…

Cryptography and Security · Computer Science 2026-01-09 Wenpeng Xing , Zhonghao Qi , Yupeng Qin , Yilin Li , Caini Chang , Jiahui Yu , Changting Lin , Zhenzhen Xie , Meng Han

Large Language Models (LLMs) are evolving from text generators into reasoning agents. This transition makes their ability to use external tools a critical capability. However, evaluating this skill presents a significant challenge. Existing…

Computation and Language · Computer Science 2025-10-14 Fei Lei , Yibo Yang , Wenxiu Sun , Dahua Lin

Multi-agent systems powered by large language models (LLMs) are transforming enterprise automation, yet systematic evaluation methodologies for assessing tool-use reliability remain underdeveloped. We introduce a comprehensive diagnostic…

Artificial Intelligence · Computer Science 2026-01-26 Donghao Huang , Gauri Malwe , Zhaoxia Wang

The rapid adoption of foundation models has significantly expanded the capabilities of software systems, enabling them to perform complex language, reasoning, and interaction tasks that were previously difficult to automate. However, this…

Software Engineering · Computer Science 2026-03-09 Mina Taraghi , Mohammad Mehdi Morovati , Foutse Khomh

True intelligence requires active capability acquisition, yet current LLM agents inject pre-defined tool schemas into prompts, reducing models to passive selectors and falling short of robust general-purpose agency. We introduce MCP-Zero,…

Artificial Intelligence · Computer Science 2025-06-25 Xiang Fei , Xiawu Zheng , Hao Feng