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This paper considers the balanced hypergraph partitioning problem, which asks for partitioning the vertices into $k$ disjoint blocks of bounded size while minimizing an objective function over the hyperedges. Here, we consider the most…

Data Structures and Algorithms · Computer Science 2021-06-17 Sebastian Schlag , Tobias Heuer , Lars Gottesbüren , Yaroslav Akhremtsev , Christian Schulz , Peter Sanders

Protein structure prediction models such as AlphaFold3 (AF3) push the frontier of biomolecular modeling by incorporating science-informed architectural changes to the transformer architecture. However, these advances come at a steep system…

Biomolecules · Quantitative Biology 2025-06-27 Hoa La , Ahan Gupta , Alex Morehead , Jianlin Cheng , Minjia Zhang

We present a deterministic parallel multilevel algorithm for balanced hypergraph partitioning that matches the state of the art for non-deterministic algorithms. Deterministic parallel algorithms produce the same result in each invocation,…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-05-13 Robert Krause , Lars Gottesbüren , Nikolai Maas

Partitioning is a well studied research problem in the area of VLSI physical design automation. In this problem, input is an integrated circuit and output is a set of almost equal disjoint blocks. The main objective of partitioning is to…

Data Structures and Algorithms · Computer Science 2014-03-04 Mitali Sinha , Suchismita Pattanaik , Rakesh Mohanty , Prachi Tripathy

Spatial computing architectures pose an attractive alternative to mitigate control and data movement overheads typical of load-store architectures. In practice, these devices are rarely considered in the HPC community due to the steep…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-04-23 Tiziano De Matteis , Johannes de Fine Licht , Torsten Hoefler

In the \textit{Distributed Storage Systems} (DSSs), an encoded fraction of information is stored in the distributed fashion on different chunk servers. Recently a new paradigm of \textit{Fractional Repetition} (FR) codes have been…

Information Theory · Computer Science 2018-06-19 Krishna Gopal Benerjee , Manish K Gupta

We present a shared-memory algorithm to compute high-quality solutions to the balanced $k$-way hypergraph partitioning problem. This problem asks for a partition of the vertex set into $k$ disjoint blocks of bounded size that minimizes the…

Data Structures and Algorithms · Computer Science 2021-04-19 Lars Gottesbüren , Tobias Heuer , Peter Sanders , Sebastian Schlag

The multi-pumping resource sharing technique can overcome the limitations commonly found in single-clocked FPGA designs by allowing hardware components to operate at a higher clock frequency than the surrounding system. However, this…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-10-11 Carl-Johannes Johnsen , Tiziano De Matteis , Tal Ben-Nun , Johannes de Fine Licht , Torsten Hoefler

Multi-Chip-Modules (MCMs) reduce the design and fabrication cost of machine learning (ML) accelerators while delivering performance and energy efficiency on par with a monolithic large chip. However, ML compilers targeting MCMs need to…

High Performance Computing (HPC) platforms allow scientists to model computationally intensive algorithms. HPC clusters increasingly use General-Purpose Graphics Processing Units (GPGPUs) as accelerators; FPGAs provide an attractive…

Hardware Architecture · Computer Science 2015-04-20 Syed Waqar Nabi , Saji N. Hameed , Wim Vanderbauwhede

SplitFed Learning (SFL) combines federated learning and split learning to enable collaborative training across distributed edge devices; however, it faces significant challenges in heterogeneous environments with diverse computational and…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-27 Abdullah Al Asif , Sixing Yu , Juan Pablo Munoz , Arya Mazaheri , Ali Jannesari

Continual graph learning (CGL) is an important and challenging task that aims to extend static GNNs to dynamic task flow scenarios. As one of the mainstream CGL methods, the experience replay (ER) method receives widespread attention due to…

Machine Learning · Computer Science 2024-08-09 Jinhui Pang , Changqing Lin , Xiaoshuai Hao , Rong Yin , Zixuan Wang , Zhihui Zhang , Jinglin He , Huang Tai Sheng

As large graph processing emerges, we observe a costly fork-processing pattern (FPP) that is common in many graph algorithms. The unique feature of the FPP is that it launches many independent queries from different source vertices on the…

Databases · Computer Science 2021-04-13 Shengliang Lu , Shixuan Sun , Johns Paul , Yuchen Li , Bingsheng He

In this paper, we propose a methodology for partitioning and mapping computational intensive applications in reconfigurable hardware blocks of different granularity. A generic hybrid reconfigurable architecture is considered so as the…

Hardware Architecture · Computer Science 2011-11-09 M. D. Galanis , A. Milidonis , G. Theodoridis , D. Soudris , C. E. Goutis

We examine what is an efficient and scalable nonlinear solver, with low work and memory complexity, for many classes of discretized partial differential equations (PDEs) - matrix-free Full multigrid (FMG) with a Full Approximation Storage…

Numerical Analysis · Mathematics 2023-06-07 Mark F. Adams

To enable the pre-trained models to be fine-tuned with local data on edge devices without sharing data with the cloud, we design an efficient split fine-tuning (SFT) framework for edge and cloud collaborative learning. We propose three…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-12-01 Shaohuai Shi , Qing Yang , Yang Xiang , Shuhan Qi , Xuan Wang

Edge-centric distributed computations have appeared as a recent technique to improve the shortcomings of think-like-a-vertex algorithms on large scale-free networks. In order to increase parallelism on this model, edge partitioning -…

Data Structures and Algorithms · Computer Science 2018-10-12 Sebastian Schlag , Christian Schulz , Daniel Seemaier , Darren Strash

Partitioning a graph into blocks of roughly equal weight while cutting only few edges is a fundamental problem in computer science with numerous practical applications. While shared-memory parallel partitioners have recently matured to…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-06-06 Peter Sanders , Daniel Seemaier

The most commonly used method to tackle the graph partitioning problem in practice is the multilevel approach. During a coarsening phase, a multilevel graph partitioning algorithm reduces the graph size by iteratively contracting nodes and…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-03-26 Henning Meyerhenke , Peter Sanders , Christian Schulz

As state of the art neural networks (NNs) continue to grow in size, their resource-efficient implementation becomes ever more important. In this paper, we introduce a compression scheme that reduces the number of computations required for…

Machine Learning · Computer Science 2025-04-25 Hans Rosenberger , Rodrigo Fischer , Johanna S. Fröhlich , Ali Bereyhi , Ralf R. Müller