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How can we tell whether two neural networks utilize the same internal processes for a particular computation? This question is pertinent for multiple subfields of neuroscience and machine learning, including neuroAI, mechanistic…

Neurons and Cognition · Quantitative Biology 2023-10-31 Mitchell Ostrow , Adam Eisen , Leo Kozachkov , Ila Fiete

We introduce a manifold analysis technique for neural network representations. Normalized Space Alignment (NSA) compares pairwise distances between two point clouds derived from the same source and having the same size, while potentially…

Machine Learning · Computer Science 2024-11-08 Danish Ebadulla , Aditya Gulati , Ambuj Singh

Diffusion geometry is a manifold learning framework that uses random walks defined by Markov transition matrices to characterize the geometry of a dataset at multiple scales. We use diffusion geometry for neural representations,…

Machine Learning · Computer Science 2026-05-18 Atharva Khandait , Jan E. Gerken

Representational similarity analysis (RSA) tests models of brain computation by investigating how neural activity patterns reflect experimental conditions. Instead of predicting activity patterns directly, the models predict the geometry of…

In many real-world applications data exhibits non-stationarity, i.e., its distribution changes over time. One approach to handling non-stationarity is to remove or minimize it before attempting to analyze the data. In the context of brain…

Machine Learning · Computer Science 2016-05-26 Inbal Horev , Florian Yger , Masashi Sugiyama

Symmetric positive definite (SPD) matrix has been demonstrated to be an effective feature descriptor in many scientific areas, as it can encode spatiotemporal statistics of the data adequately on a curved Riemannian manifold, i.e., SPD…

Computer Vision and Pattern Recognition · Computer Science 2023-11-29 Rui Wang , Xiao-Jun Wu , Hui Li , Josef Kittler

Understanding how the brain represents and processes information is crucial for advancing neuroscience and artificial intelligence. Representational similarity analysis (RSA) has been instrumental in characterizing neural representations,…

Neurons and Cognition · Quantitative Biology 2024-08-23 Baihan Lin

A multitude of (dis)similarity measures between neural network representations have been proposed, resulting in a fragmented research landscape. Most of these measures fall into one of two categories. First, measures such as linear…

Machine Learning · Statistics 2023-11-21 Sarah E. Harvey , Brett W. Larsen , Alex H. Williams

In this work, we investigate Riemannian geometry based dimensionality reduction methods that respect the underlying manifold structure of the data. In particular, we focus on Principal Geodesic Analysis (PGA) as a nonlinear generalization…

Machine Learning · Computer Science 2026-02-06 Alaa El Ichi , Khalide Jbilou

Quantifying similarity between neural representations -- e.g. hidden layer activation vectors -- is a perennial problem in deep learning and neuroscience research. Existing methods compare deterministic responses (e.g. artificial networks…

Machine Learning · Computer Science 2023-02-07 Lyndon R. Duong , Jingyang Zhou , Josue Nassar , Jules Berman , Jeroen Olieslagers , Alex H. Williams

Decoding approaches are widely used in neuroscience and machine learning to compare stimulus representations across neural systems, such as different brain regions, organisms, and deep learning models. Popular methods include decoding…

Neurons and Cognition · Quantitative Biology 2026-05-08 Johannes Bertram , Luciano Dyballa , T. Anderson Keller , Savik Kinger , Steven W. Zucker

Understanding the operation of biological and artificial networks remains a difficult and important challenge. To identify general principles, researchers are increasingly interested in surveying large collections of networks that are…

Machine Learning · Statistics 2022-01-14 Alex H. Williams , Erin Kunz , Simon Kornblith , Scott W. Linderman

In a previous work, we proposed a geometric framework to study a deep neural network, seen as sequence of maps between manifolds, employing singular Riemannian geometry. In this paper, we present an application of this framework, proposing…

Machine Learning · Computer Science 2022-09-26 Alessandro Benfenati , Alessio Marta

Manifold learning has been proven to be an effective method for capturing the implicitly intrinsic structure of non-Euclidean data, in which one of the primary challenges is how to maintain the distortion-free (isometry) of the data…

Machine Learning · Computer Science 2024-09-24 Zihao Chen , Wenyong Wang , Yu Xiang

What representation do deep neural networks learn? How similar are images to each other for neural networks? Despite the overwhelming success of deep learning methods key questions about their internal workings still remain largely…

Computer Vision and Pattern Recognition · Computer Science 2024-10-31 Tassilo Wald , Constantin Ulrich , Gregor Köhler , David Zimmerer , Stefan Denner , Michael Baumgartner , Fabian Isensee , Priyank Jaini , Klaus H. Maier-Hein

This paper presents a mathematical framework for analyzing machine learning models through the geometry of their induced partitions. By representing partitions as Riemannian simplicial complexes, we capture not only adjacency relationships…

Machine Learning · Computer Science 2025-08-05 Pawel Gajer , Jacques Ravel

The extent to which different neural or artificial neural networks (models) rely on equivalent representations to support similar tasks remains a central question in neuroscience and machine learning. Prior work has typically compared…

Neurons and Cognition · Quantitative Biology 2026-04-06 Jialin Wu , Shreya Saha , Yiqing Bo , Meenakshi Khosla

Similarity metrics such as representational similarity analysis (RSA) and centered kernel alignment (CKA) have been used to compare layer-wise representations between neural networks. However, these metrics are confounded by the population…

Machine Learning · Statistics 2022-02-02 Tianyu Cui , Yogesh Kumar , Pekka Marttinen , Samuel Kaski

Despite significant advances in the field of deep learning in ap-plications to various areas, an explanation of the learning pro-cess of neural network models remains an important open ques-tion. The purpose of this paper is a comprehensive…

Machine Learning · Computer Science 2023-06-07 German Magai

Parametrizations of data manifolds in shape spaces can be computed using the rich toolbox of Riemannian geometry. This, however, often comes with high computational costs, which raises the question if one can learn an efficient neural…

Machine Learning · Computer Science 2023-09-04 Josua Sassen , Klaus Hildebrandt , Martin Rumpf , Benedikt Wirth
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