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Recent experiments in epithelial wound healing have demonstrated the necessity of Mitogen-activated protein kinase (MAPK) for coordinated cell movement after damage. This MAPK activity is characterized by two wave-like phenomena. One MAPK…

Cell Behavior · Quantitative Biology 2009-10-20 Filippo Posta , Tom Chou

Recent advances in deep learning have shown that learning robust feature representations is critical for the success of many computer vision tasks, including medical image segmentation. In particular, both transformer and…

Computer Vision and Pattern Recognition · Computer Science 2025-02-03 David Li , Anvar Kurmukov , Mikhail Goncharov , Roman Sokolov , Mikhail Belyaev

Connecting cell behavior to tissue shape and mechanics is a key challenge in the physics of morphogenesis. Cytoskeletal turnover precludes a fixed reference state, and tensions are actively generated independently of strain; so conventional…

Soft Condensed Matter · Physics 2026-05-28 Nikolas H. Claussen , Fridtjof Brauns , Boris I. Shraiman

This paper deals with the micro-macro derivation of virus models coupled with a reaction diffusion models that generates the dynamics in space of the virus particles. The first part of the presentation focuses, starting from [5, 6] on a…

Dynamical Systems · Mathematics 2021-12-15 Diletta Burini , Nadia Chouhad

We consider a continuum mechanical model for the migration of multiple cell populations through parts of tissue separated by thin membranes. In this model, cells belonging to different populations may be characterised by different…

Analysis of PDEs · Mathematics 2021-09-28 Chiara Giverso , Tommaso Lorenzi , Luigi Preziosi

We address the prediction of ductile damage and material anisotropy accumulated during plastic deformation of metals. A new model of phenomenological metal plasticity is proposed which is suitable for applications involving large…

Materials Science · Physics 2015-04-01 A. V. Shutov , C. B. Silbermann , J. Ihlemann

The present work introduces a rigorous stochastic model, named Generalized Stochastic Microdosimetric Model (GSM2), to describe biological damage induced by ionizing radiation. Starting from microdosimetric spectra of energy deposition in…

Biological Physics · Physics 2021-01-27 F. Cordoni , M. Missiaggia , A. Attili , S. M. Welford , E. Scifoni , C. La Tessa

We present a general definition of damage spreading in a pair of models. Using this general framework, one can define damage spreading in an objective manner, that does not depend on the particular dynamic procedure that is being used. The…

Statistical Mechanics · Physics 2009-10-28 Haye Hinrichsen , Joshua S. Weitz , Eytan Domany

We present a spatial hybrid discrete-continuum modelling framework for the interaction dynamics between tumour cells and cytotoxic T cells, which play a pivotal role in the immune response against tumours. In this framework, tumour cells…

Analysis of PDEs · Mathematics 2022-10-10 Luis Almeida , Chloe Audebert , Emma Leschiera , Tommaso Lorenzi

Most of the existing methods for fatigue-driven delamination are limited to two-dimensional (2D) applications or their predictive capabilities have not been validated in three-dimensional (3D) problems. This work presents a new cohesive…

Computational Engineering, Finance, and Science · Computer Science 2019-05-14 Laura Carreras , Albert Turon , Brian L. V. Bak , Esben Lindgaard , Jordi Renart , Federico M. de la Escalera , Yasser Essa

A compartment epidemic model for infectious disease spreading is investigated, where movement of individuals is governed by spatial diffusion. The model includes infection age of the infected individuals and assumes a logistic growth of the…

Analysis of PDEs · Mathematics 2023-06-28 Christoph Walker

While it is commonly observed that the shape dynamics of mammalian cells can undergo large random fluctuations, theoretical models aiming at capturing cell mechanics often focus on the deterministic part of the motion. In this paper, we…

Biological Physics · Physics 2021-04-07 Vikram Deshpande , Antonio DeSimone , Robert McMeeking , Pierre Recho

The acid-mediated tumor invasion hypothesis proposes that altered glucose metabolism exhibited by the vast majority of tumors leads to increased acid (H+ ion) production which subsequently facilitates tumor invasion [1-3]. The…

Tissues and Organs · Quantitative Biology 2019-06-10 Ahmed M. Fouad

A new gradient-based formulation for predicting fracture in elastic-plastic solids is presented. Damage is captured by means of a phase field model that considers both the elastic and plastic works as driving forces for fracture. Material…

Computational Engineering, Finance, and Science · Computer Science 2021-08-12 S. S. Shishvan , S. Assadpour-asl , E. Martínez-Pañeda

We present an investigation into diffusion models for molecular generation, with the aim of better understanding how their predictions compare to the results of physics-based calculations. The investigation into these models is driven by…

We investigate the long-time dynamics and optimal control problem of a diffuse interface model that describes the growth of a tumor in presence of a nutrient and surrounded by host tissues. The state system consists of a Cahn-Hilliard type…

Analysis of PDEs · Mathematics 2023-07-28 Cecilia Cavaterra , Elisabetta Rocca , Hao Wu

Cell populations invade through a combination of proliferation and motility. Proliferation depends on the internal timing of cell division: how long cells take to complete the cell cycle. This timing varies substantially within (and across)…

Cell Behavior · Quantitative Biology 2025-11-26 Stéphanie M. C. Abo , Ruth E. Baker

We study damage spreading in models of two-dimensional systems undergoing first order phase transitions. We consider several models from the same non-conserved order parameter universality class, and find unexpected differences between…

Condensed Matter · Physics 2009-10-22 I. S. Graham , E. Hernandez-Garcia , M. Grant

Cloth manipulation is challenging due to its highly complex dynamics, near-infinite degrees of freedom, and frequent self-occlusions, which complicate both state estimation and dynamics modeling. Inspired by recent advances in generative…

Robotics · Computer Science 2025-09-03 Tongxuan Tian , Haoyang Li , Bo Ai , Xiaodi Yuan , Zhiao Huang , Hao Su

The short-time critical dynamics of propagation of damage in the Ising ferromagnet in two dimensions is studied by means of Monte Carlo simulations. Starting with equilibrium configurations at $T= \infty$ and magnetization $M=0$, an initial…

Statistical Mechanics · Physics 2015-05-18 M. Leticia Rubio Puzzo , Ezequiel V. Albano