English
Related papers

Related papers: Structural Graph Probing of Vision-Language Models

200 papers

Graph neural networks (GNNs) are increasingly used to model biological systems, yet the reliability of post-hoc explanation methods for recovering meaningful molecular mechanisms remains unclear. Here, we systematically evaluate four widely…

Molecular Networks · Quantitative Biology 2026-05-22 Kyle Higgins , Ivan Laponogov , Dennis Veselkov , Kirill Veselkov

Large Vision Language Models (LVLMs) have achieved remarkable progress in multimodal tasks, yet they also exhibit notable social biases. These biases often manifest as unintended associations between neutral concepts and sensitive human…

Artificial Intelligence · Computer Science 2025-05-28 Zhengyang Ji , Yifan Jia , Shang Gao , Yutao Yue

A central question in neuroscience is how self-organizing dynamic interactions in the brain emerge on their relatively static structural backbone. Due to the complexity of spatial and temporal dependencies between different brain areas,…

Neurons and Cognition · Quantitative Biology 2020-10-15 Simon Wein , Wilhelm Malloni , Ana Maria Tomé , Sebastian M. Frank , Gina-Isabelle Henze , Stefan Wüst , Mark W. Greenlee , Elmar W. Lang

With the growing adoption of AI-based systems across everyday life, the need to understand their decision-making mechanisms is correspondingly increasing. The level at which we can trust the statistical inferences made from AI-based…

Machine Learning · Statistics 2024-04-15 Adam Spannaus , Heidi A. Hanson , Lynne Penberthy , Georgia Tourassi

Vascular networks play a crucial role in understanding brain functionalities. Brain integrity and function, neuronal activity and plasticity, which are crucial for learning, are actively modulated by their local environments, specifically…

Neurons and Cognition · Quantitative Biology 2024-02-28 Jiachen Yao , Nina Hagemann , Qiaojie Xiong , Jianxu Chen , Dirk M. Hermann , Chao Chen

Understanding the dynamic reorganization of brain networks is critical for predicting cognitive decline, neurological progression, and individual variability in clinical outcomes. This work proposes a multimodal graph neural network…

Machine Learning · Computer Science 2026-02-11 Preksha Girish , Rachana Mysore , Kiran K. N. , Hiranmayee R. , Shipra Prashanth , Shrey Kumar

Cognitive control, the ability to coordinate competing information sources in pursuit of goals, is fundamental to intelligent behavior. We systematically investigate whether Vision Language Models (VLMs) exhibit cognitive control and how…

Neural and Evolutionary Computing · Computer Science 2026-03-02 Bingyang Wang , Yijiang Li , Yitong Qiao , Maijunxian Wang , Tianwei Zhao , Yucheng Sun , Binyue Deng , Hokin Deng , Nuno Vasconcelos , Dezhi Luo

While Language Models (LMs) are the workhorses of NLP, their interplay with structured knowledge graphs (KGs) is still actively researched. Current methods for encoding such graphs typically either (i) linearize them for embedding with LMs…

Computation and Language · Computer Science 2024-06-04 Moritz Plenz , Anette Frank

Integrating structured knowledge from Knowledge Graphs (KGs) into Large Language Models (LLMs) enhances factual grounding and reasoning capabilities. This survey paper systematically examines the synergy between KGs and LLMs, categorizing…

Computation and Language · Computer Science 2025-06-12 Blaž Škrlj , Boshko Koloski , Senja Pollak , Nada Lavrač

Structured road understanding of lane geometry, topology, and traffic element relationships is foundational to safe autonomous driving. While vision-language models (VLMs) offer promising semantic flexibility, they lack the geometric and…

Computer Vision and Pattern Recognition · Computer Science 2026-05-21 Lena Wild , Katie Z Luo , Marco Pavone

The proliferation of deep neural networks in various domains has seen an increased need for interpretability of these models. Preliminary work done along this line and papers that surveyed such, are focused on high-level representation…

Computation and Language · Computer Science 2022-08-17 Hassan Sajjad , Nadir Durrani , Fahim Dalvi

Recent advances in vision-language models (VLMs) have improved image captioning for cultural heritage. However, inferring structured cultural metadata (e.g., creator, origin, period) from visual input remains underexplored. We introduce a…

Computer Vision and Pattern Recognition · Computer Science 2026-04-09 Yuechen Jiang , Enze Zhang , Md Mohsinul Kabir , Qianqian Xie , Stavroula Golfomitsou , Konstantinos Arvanitis , Sophia Ananiadou

Graph visualizations have been studied for tasks such as clustering and temporal analysis, but how these visual similarities relate to established graph similarity measures remains unclear. In this paper, we explore the potential of Vision…

Human-Computer Interaction · Computer Science 2025-04-15 Seokweon Jung , Hyeon Jeon , Jeongmin Rhee , Jinwook Seo

Multimodal brain networks characterize complex connectivities among different brain regions from both structural and functional aspects and provide a new means for mental disease analysis. Recently, Graph Neural Networks (GNNs) have become…

Neurons and Cognition · Quantitative Biology 2022-05-25 Yanqiao Zhu , Hejie Cui , Lifang He , Lichao Sun , Carl Yang

This paper presents a mathematically rigorous framework for brain-inspired representation learning founded on the interplay between persistent topological structures and cohomological flows. Neural computation is reformulated as the…

Machine Learning · Computer Science 2025-12-10 Preksha Girish , Rachana Mysore , Mahanthesha U , Shrey Kumar , Shipra Prashant

Vision-Language Models (VLMs) have rapidly advanced by leveraging powerful pre-trained Large Language Models (LLMs) as core reasoning backbones. As new and more capable LLMs emerge with improved reasoning, instruction-following, and…

Artificial Intelligence · Computer Science 2026-04-14 Sameera Horawalavithana , Lauren Phillips , Ian Stewart , Sai Munikoti , Karl Pazdernik

We address the problem of graph classification based only on structural information. Inspired by natural language processing techniques (NLP), our model sequentially embeds information to estimate class membership probabilities. Besides, we…

Machine Learning · Computer Science 2019-05-14 Edouard Pineau , Nathan de Lara

The integration of Large Language Models (LLMs) and Graph Neural Networks (GNNs) promises to unify semantic understanding with structural reasoning, yet existing methods typically rely on static, unidirectional pipelines. These approaches…

Information Retrieval · Computer Science 2026-03-23 Jinming Xing , Muhammad Shahzad

In order to achieve a general visual question answering (VQA) system, it is essential to learn to answer deeper questions that require compositional reasoning on the image and external knowledge. Meanwhile, the reasoning process should be…

Computer Vision and Pattern Recognition · Computer Science 2022-06-28 Zihao Zhu

We perform topological data analysis on the internal states of convolutional deep neural networks to develop an understanding of the computations that they perform. We apply this understanding to modify the computations so as to (a) speed…

Machine Learning · Computer Science 2018-11-06 Gunnar Carlsson , Rickard Brüel Gabrielsson