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We introduce merge-width, a family of graph parameters that unifies several structural graph measures, including treewidth, degeneracy, twin-width, clique-width, and generalized coloring numbers. Our parameters are based on new…

Combinatorics · Mathematics 2025-02-26 Jan Dreier , Szymon Toruńczyk

A class of structures is monadically dependent if one cannot interpret all graphs in colored expansions from the class using a fixed first-order formula. A tree-ordered $\sigma$-structure is the expansion of a $\sigma$-structure with a…

Discrete Mathematics · Computer Science 2026-01-26 Hector Buffière , Yuquan Lin , Jaroslav Nešetřil , Patrice Ossona de Mendez , Sebastian Siebertz

We continue developing the theory around the twin-width of totally ordered binary structures, initiated in the previous paper of the series. We first introduce the notion of parity and linear minors of a matrix, which consists of…

Data Structures and Algorithms · Computer Science 2022-09-27 Édouard Bonnet , Ugo Giocanti , Patrice Ossona de Mendez , Stéphan Thomassé

In this paper we introduce a general framework for the study of limits of relational structures in general and graphs in particular, which is based on a combination of model theory and (functional) analysis. We show how the various…

Combinatorics · Mathematics 2021-04-23 Jaroslav Nesetril , Patrice Ossona De Mendez

A contraction sequence of a graph consists of iteratively merging two of its vertices until only one vertex remains. The recently introduced twin-width graph invariant is based on contraction sequences. More precisely, if one puts red edges…

Data Structures and Algorithms · Computer Science 2022-06-02 Édouard Bonnet , Eun Jung Kim , Amadeus Reinald , Stéphan Thomassé

Deep neural networks employ specialized architectures for vision, sequential and language tasks, yet this proliferation obscures their underlying commonalities. We introduce a unified matrix-order framework that casts convolutional,…

Machine Learning · Computer Science 2025-07-24 Yuzhou Zhu

Work introduces a hierarchical binary tree-based reduction that replaces standard self-attention. The core idea is to use a recursive Gated Linear Unit merge operation, achieving O(n) total merge operations O(log n) parallel depth O(n d^2)…

Machine Learning · Computer Science 2026-03-03 Igor Berezkin

Merge-width, recently introduced by Dreier and Toru\'nczyk, is a common generalisation of bounded expansion classes and twin-width for which the first-order model checking problem remains tractable. We prove that a number of basic…

Combinatorics · Mathematics 2025-06-17 Marthe Bonamy , Colin Geniet

The model theory based notion of the first order convergence unifies the notions of the left-convergence for dense structures and the Benjamini-Schramm convergence for sparse structures. It is known that every first order convergent…

Combinatorics · Mathematics 2016-08-16 Frantisek Kardos , Daniel Kral , Anita Liebenau , Lukas Mach

In this paper, we extend the notion of a merge tree to that of a generalized merge tree, a merge tree that includes 1-dimensional cycle birth information. Given a discrete Morse function on a $1$-dimensional regular CW complex, we construct…

Algebraic Topology · Mathematics 2025-01-14 Julian Brüggemann , Nicholas A. Scoville

We investigate the structure of graphs of twin-width at most $1$, and obtain the following results: - Graphs of twin-width at most $1$ are permutation graphs. In particular they have an intersection model and a linear structure. - There is…

Discrete Mathematics · Computer Science 2025-01-03 Jungho Ahn , Hugo Jacob , Noleen Köhler , Christophe Paul , Amadeus Reinald , Sebastian Wiederrecht

At typical context lengths, the feed-forward MLP block accounts for a large share of a transformer's compute budget, motivating sparse alternatives to dense MLP blocks. We study sparse, tree-structured feed-forward layers as drop-in…

Computation and Language · Computer Science 2026-04-13 Reza Sedghi , Robin Schiewer , Anand Subramoney , David Kappel

The use of machine learning algorithms in finance, medicine, and criminal justice can deeply impact human lives. As a consequence, research into interpretable machine learning has rapidly grown in an attempt to better control and fix…

Machine Learning · Computer Science 2021-02-02 Thibaut Vidal , Toni Pacheco , Maximilian Schiffer

Sparse structures are frequently sought when pursuing tractability in optimization problems. They are exploited from both theoretical and computational perspectives to handle complex problems that become manageable when sparsity is present.…

Discrete Mathematics · Computer Science 2019-03-21 Yuri Faenza , Gonzalo Muñoz , Sebastian Pokutta

We present sparse tree-based and list-based density estimation methods for binary/categorical data. Our density estimation models are higher dimensional analogies to variable bin width histograms. In each leaf of the tree (or list), the…

Machine Learning · Statistics 2023-11-16 Siong Thye Goh , Lesia Semenova , Cynthia Rudin

Sparse approximations using highly over-complete dictionaries is a state-of-the-art tool for many imaging applications including denoising, super-resolution, compressive sensing, light-field analysis, and object recognition. Unfortunately,…

Computer Vision and Pattern Recognition · Computer Science 2014-12-03 Ali Ayremlou , Thomas Goldstein , Ashok Veeraraghavan , Richard Baraniuk

In this paper we investigate undirected discrete graphical tree models when all the variables in the system are binary, where leaves represent the observable variables and where all the inner nodes are unobserved. A novel approach based on…

Statistics Theory · Mathematics 2012-03-06 Piotr Zwiernik , Jim Q. Smith

Topologically constrained genome-like polymers often double-fold into tree-like configurations, which can be modelled on the level of folded (ring) polymers or on the level of the underlying random trees. For both descriptions, we have…

Soft Condensed Matter · Physics 2026-05-19 Pieter H. W. van der Hoek , Angelo Rosa , Elham Ghobadpour , Ralf Everaers

Merge trees are a common topological descriptor for data with a hierarchical component, such as terrains and scalar fields. The interleaving distance, in turn, is a common distance for comparing merge trees. However, the interleaving…

Computational Geometry · Computer Science 2025-01-13 Thijs Beurskens , Tim Ophelders , Bettina Speckmann , Kevin Verbeek

Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty
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