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We propose Graph Tree Networks (GTNets), a deep graph learning architecture with a new general message passing scheme that originates from the tree representation of graphs. In the tree representation, messages propagate upward from the…

Machine Learning · Computer Science 2022-04-28 Nan Wu , Chaofan Wang

Graph Neural Networks (GNNs) often struggle in preserving high-frequency components of nodal signals when dealing with directed graphs. Such components are crucial for modeling flow dynamics, without which a traditional GNN tends to treat a…

Machine Learning · Computer Science 2025-06-09 Haoyang Jiang , Jindong Wang , Xingquan Zhu , Yi He

We propose a novel Graph Neural Network (GNN) model, named DeepStateGNN, for analyzing traffic data, demonstrating its efficacy in two critical tasks: forecasting and reconstruction. Unlike typical GNN methods that treat each traffic sensor…

Machine Learning · Computer Science 2025-02-21 Yannick Wölker , Arash Hajisafi , Cyrus Shahabi , Matthias Renz

We present GERN, a novel scalable framework for training GNNs in node classification tasks, based on effective resistance, a standard tool in spectral graph theory. Our method progressively refines the GNN weights on a sequence of random…

Machine Learning · Computer Science 2025-02-25 Francesco Bonchi , Claudio Gentile , Francesco Paolo Nerini , André Panisson , Fabio Vitale

Graph neural networks (GNNs) work remarkably well in semi-supervised node regression, yet a rigorous theory explaining when and why they succeed remains lacking. To address this gap, we study an aggregate-and-readout model that encompasses…

Machine Learning · Statistics 2026-02-20 Juntong Chen , Claire Donnat , Olga Klopp , Johannes Schmidt-Hieber

Graph neural networks (GNNs) are powerful models that have been successful in various graph representation learning tasks. Whereas gradient boosted decision trees (GBDT) often outperform other machine learning methods when faced with…

Machine Learning · Computer Science 2021-04-01 Sergei Ivanov , Liudmila Prokhorenkova

This paper presents a Temporal Graph Neural Network (TGNN) framework for detection and localization of false data injection and ramp attacks on the system state in smart grids. Capturing the topological information of the system through the…

Machine Learning · Computer Science 2023-03-28 Seyed Hamed Haghshenas , Md Abul Hasnat , Mia Naeini

Graph Neural Networks (GNNs) have shown great promise in learning node embeddings for link prediction (LP). While numerous studies aim to improve the overall LP performance of GNNs, none have explored its varying performance across…

Machine Learning · Computer Science 2023-10-10 Yu Wang , Tong Zhao , Yuying Zhao , Yunchao Liu , Xueqi Cheng , Neil Shah , Tyler Derr

Graph convolutional networks (GCNs) have recently achieved great empirical success in learning graph-structured data. To address its scalability issue due to the recursive embedding of neighboring features, graph topology sampling has been…

Machine Learning · Computer Science 2023-12-12 Hongkang Li , Meng Wang , Sijia Liu , Pin-Yu Chen , Jinjun Xiong

Deep Reinforcement Learning (DRL) presents a promising avenue for optimizing Energy Storage Systems (ESSs) dispatch in distribution networks. This paper introduces RL-ADN, an innovative open-source library specifically designed for solving…

Machine Learning · Computer Science 2024-08-09 Shengren Hou , Shuyi Gao , Weijie Xia , Edgar Mauricio Salazar Duque , Peter Palensky , Pedro P. Vergara

Power grids are critical infrastructures of paramount importance to modern society and their rapid evolution and interconnections has heightened the complexity of power systems (PS) operations. Traditional methods for grid analysis struggle…

Machine Learning · Computer Science 2024-07-18 Salah Ghamizi , Aleksandar Bojchevski , Aoxiang Ma , Jun Cao

With increasing concerns about privacy attacks and potential sensitive information leakage, researchers have actively explored methods to efficiently remove sensitive training data and reduce privacy risks in graph neural network (GNN)…

Machine Learning · Computer Science 2025-09-08 Faqian Guan , Tianqing Zhu , Zhoutian Wang , Wei Ren , Wanlei Zhou

As the emerging trend of graph-based deep learning, Graph Neural Networks (GNNs) excel for their capability to generate high-quality node feature vectors (embeddings). However, the existing one-size-fits-all GNN implementations are…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-22 Yuke Wang , Boyuan Feng , Gushu Li , Shuangchen Li , Lei Deng , Yuan Xie , Yufei Ding

Graph neural networks excel at modeling pairwise interactions, but they cannot flexibly accommodate higher-order interactions and features. Topological deep learning (TDL) has emerged recently as a promising tool for addressing this issue.…

Machine Learning · Computer Science 2025-02-07 Claudio Battiloro , Ege Karaismailoğlu , Mauricio Tec , George Dasoulas , Michelle Audirac , Francesca Dominici

The transition away from carbon-based energy sources poses several challenges for the operation of electricity distribution systems. Increasing shares of distributed energy resources (e.g. renewable energy generators, electric vehicles) and…

Machine Learning · Computer Science 2021-03-15 Francesco Fusco , Bradley Eck , Robert Gormally , Mark Purcell , Seshu Tirupathi

Graph neural architecture search (GraphNAS) has demonstrated advantages in mitigating performance degradation of graph neural networks (GNNs) due to distribution shifts. Recent approaches introduce weight sharing across tailored…

Machine Learning · Computer Science 2025-03-07 Qiyi Wang , Yinning Shao , Yunlong Ma , Min Liu

Network topology excels at structural predictions but fails to capture functional semantics encoded in biomedical literature. We present RAG-GNN, an end-to-end trainable retrieval-augmented graph neural network framework that integrates GNN…

Molecular Networks · Quantitative Biology 2026-05-14 Hasi Hays , William J. Richardson

Graph Neural Networks (GNNs) have achieved tremendous success in a variety of real-world applications by relying on the fixed graph data as input. However, the initial input graph might not be optimal in terms of specific downstream tasks,…

Machine Learning · Computer Science 2023-09-22 Beidi Zhao , Boxin Du , Zhe Xu , Liangyue Li , Hanghang Tong

Graph classification has gained significant attention due to its applications in chemistry, social networks, and bioinformatics. While Graph Neural Networks (GNNs) effectively capture local structural patterns, they often overlook global…

Machine Learning · Computer Science 2025-12-03 Ahmet Sami Korkmaz , Selim Coskunuzer , Md Joshem Uddin

Predicting the effect of amino acid mutations on enzyme thermodynamic stability (DDG) is fundamental to protein engineering and drug design. While recent deep learning approaches have shown promise, they often process sequence and structure…

Machine Learning · Computer Science 2025-11-10 Abigail Lin
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