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The in-context learning capabilities of large language models (LLMs) show great potential in mental health support. However, the lack of counseling datasets, particularly in Chinese corpora, restricts their application in this field. To…

Computation and Language · Computer Science 2025-03-06 Keqi Chen , Zekai Sun , Yuhua Wen , Huijun Lian , Yingming Gao , Ya Li

According to the U.S. National Institutes of Health, more than 3.4 million children experience speech disorders that require clinical intervention. The number of speech-language pathologists (SLPs) is roughly 20 times fewer than the number…

Computation and Language · Computer Science 2025-10-09 Fagun Patel , Duc Q. Nguyen , Sang T. Truong , Jody Vaynshtok , Sanmi Koyejo , Nick Haber

Large Language Models (LLMs) have grown exponentially since the release of ChatGPT. These models have gained attention due to their robust performance on various tasks, including language processing tasks. These models achieve understanding…

Computation and Language · Computer Science 2025-08-11 Ali Sarabadani , Maryam Abdollahi Shamami , Hamidreza Sadeghsalehi , Borhan Asadi , Saba Hesaraki

Objective: To evaluate large language models (LLMs) against supervised baselines for fine-grained, lesion-level detection of incidentalomas requiring follow-up, addressing the limitations of current document-level classification systems.…

Computation and Language · Computer Science 2025-12-08 Namu Park , Farzad Ahmed , Zhaoyi Sun , Kevin Lybarger , Ethan Breinhorst , Julie Hu , Ozlem Uzuner , Martin Gunn , Meliha Yetisgen

Background: A large number of neurology case reports have been published, but it is a challenging task for human medical experts to explore all of these publications. Text mining offers a computational approach to investigate neurology…

Quantitative Methods · Quantitative Biology 2019-06-10 Amir Karami , Mehdi Ghasemi , Souvik Sen , Marcos Moraes , Vishal Shah

Automated information extraction with natural language processing (NLP) tools is required to gain systematic insights from the large number of COVID-19 publications, reports and social media posts, which far exceed human processing…

Other Quantitative Biology · Quantitative Biology 2025-06-16 Salma Kazemi Rashed , Rafsan Ahmed , Johan Frid , Sonja Aits

Delirium is an acute decline or fluctuation in attention, awareness, or other cognitive function that can lead to serious adverse outcomes. Despite the severe outcomes, delirium is frequently unrecognized and uncoded in patients' electronic…

Availability of large and diverse medical datasets is often challenged by privacy and data sharing restrictions. For successful application of machine learning techniques for disease diagnosis, prognosis, and precision medicine, large…

NLP in mental health has been primarily social media focused. Real world practitioners also have high case loads and often domain specific variables, of which modern LLMs lack context. We take a dataset made by recruiting 644 participants,…

Computation and Language · Computer Science 2024-06-19 Ankit Aich , Avery Quynh , Pamela Osseyi , Amy Pinkham , Philip Harvey , Brenda Curtis , Colin Depp , Natalie Parde

The Genebass dataset, released by Karczewski et al. (2022), provides a comprehensive resource elucidating associations between genes and 4,529 phenotypes based on nearly 400,000 exomes from the UK Biobank. This extensive dataset enables the…

Genomics · Quantitative Biology 2024-11-21 Pengjun Guo , He Zhu

Obtaining text datasets with semantic annotations is an effortful process, yet crucial for supervised training in natural language processsing (NLP). In general, developing and applying new NLP pipelines in domain-specific contexts for…

Computation and Language · Computer Science 2022-09-01 Johann Frei , Frank Kramer

Deep neural network models have recently achieved state-of-the-art performance gains in a variety of natural language processing (NLP) tasks (Young, Hazarika, Poria, & Cambria, 2017). However, these gains rely on the availability of large…

Computation and Language · Computer Science 2018-11-15 Maximilian Hofer , Andrey Kormilitzin , Paul Goldberg , Alejo Nevado-Holgado

Background Advancements in Large Language Models (LLMs) hold transformative potential in healthcare, however, recent work has raised concern about the tendency of these models to produce outputs that display racial or gender biases.…

We present a novel contribution to Spanish clinical natural language processing by introducing the largest publicly available clinical corpus, ClinText-SP, along with a state-of-the-art clinical encoder language model, RigoBERTa Clinical.…

Computation and Language · Computer Science 2025-03-25 Guillem García Subies , Álvaro Barbero Jiménez , Paloma Martínez Fernández

The development of conversational agents to interact with patients and deliver clinical advice has attracted the interest of many researchers, particularly in light of the COVID-19 pandemic. The training of an end-to-end neural based dialog…

Computation and Language · Computer Science 2022-12-13 Deeksha Varshney , Aizan Zafar , Niranshu Kumar Behra , Asif Ekbal

Objective: Using natural language processing (NLP) to find sentences that state treatment plans in a clinical note, would automate plan extraction and would further enable their use in tools that help providers and care managers. However,…

Computation and Language · Computer Science 2019-07-01 Ananya Poddar , Bharath Dandala , Murthy Devarakonda

Speech-based analysis offers a scalable and non-invasive approach for detecting cognitive decline, yet progress has been constrained by the limited availability of clinically validated datasets collected under realistic conditions. We…

Electronic health records (EHR) contain large volumes of unstructured text, requiring the application of Information Extraction (IE) technologies to enable clinical analysis. We present the open-source Medical Concept Annotation Toolkit…

Objective: Few-shot learning (FSL) methods require small numbers of labeled instances for training. As many medical topics have limited annotated textual data in practical settings, FSL-based natural language processing (NLP) methods hold…

Computation and Language · Computer Science 2022-05-02 Yao Ge , Yuting Guo , Yuan-Chi Yang , Mohammed Ali Al-Garadi , Abeed Sarker

Entity recognition is a critical first step to a number of clinical NLP applications, such as entity linking and relation extraction. We present the first attempt to apply state-of-the-art entity recognition approaches on a newly released…

Computation and Language · Computer Science 2019-10-04 Kathleen C. Fraser , Isar Nejadgholi , Berry De Bruijn , Muqun Li , Astha LaPlante , Khaldoun Zine El Abidine