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Drug discovery is a complex, multi-step pipeline that remains heavily dependent on manual, experience-driven operations; meanwhile, existing customized artificial intelligence tools are fragmented across web applications, desktop software,…

Biomolecules · Quantitative Biology 2026-03-03 Qihua Pan , Dong Xu , Qianwei Yang , Jenna Xinyi Yao , Sisi Yuan , Zexuan Zhu , Jianqiang Li , Junkai Ji

Software testing plays a critical role in ensuring that systems behave as intended. However, existing automated testing approaches struggle to match the capabilities of human engineers due to key limitations such as test locality, lack of…

Software Engineering · Computer Science 2025-06-16 Kangping Xu , Yifan Luo , Yang Yuan , Andrew Chi-Chih Yao

We present the Comprehensive Verilog Design Problems (CVDP) benchmark, a new dataset and infrastructure to advance LLM and agent research in hardware design and verification. CVDP includes 783 problems across 13 task categories, covering…

Machine Learning · Computer Science 2025-06-18 Nathaniel Pinckney , Chenhui Deng , Chia-Tung Ho , Yun-Da Tsai , Mingjie Liu , Wenfei Zhou , Brucek Khailany , Haoxing Ren

Large Language Models (LLMs) have substantially influenced various software engineering tasks. Indeed, in the case of software refactoring, traditional LLMs have shown the ability to reduce development time and enhance code quality.…

Software Engineering · Computer Science 2026-03-06 Khouloud Oueslati , Maxime Lamothe , Foutse Khomh

The integration of Formal Verification tools with Large Language Models (LLMs) offers a path to scale software verification beyond manual workflows. However, current methods remain unreliable: without a solid theoretical footing, the…

Artificial Intelligence · Computer Science 2025-12-18 PIerre Dantas , Lucas Cordeiro , Youcheng Sun , Waldir Junior

In this paper we introduce ResearchCodeAgent, a novel multi-agent system leveraging large language models (LLMs) agents to automate the codification of research methodologies described in machine learning literature. The system bridges the…

Software Engineering · Computer Science 2025-05-06 Shubham Gandhi , Dhruv Shah , Manasi Patwardhan , Lovekesh Vig , Gautam Shroff

Large Language Models (LLMs) are increasingly used to automatically generate optimized CUDA kernels, substantially improving developer productivity. However, despite rapid generation, these kernels often contain subtle correctness bugs and…

Software Engineering · Computer Science 2026-03-19 Bodhisatwa Chatterjee , Drew Zagieboylo , Sana Damani , Siva Hari , Christos Kozyrakis

Hardware verification is one of the most challenging stages of the hardware design process, requiring significant time and resources to ensure a design is fully validated and production-ready. Verification teams aim to maximize design…

Hardware Architecture · Computer Science 2026-05-22 Sean Lowe , Elias Hilaneh , Alma Babbit , Nakul Gopalan , Vidya Chhabria , Aman Arora

Recent advances in large language models (LLMs) offer promising potential for automating formal methods. However, applying them to formal verification remains challenging due to the complexity of specification languages, the risk of…

Software Engineering · Computer Science 2025-09-30 Xinyue Zuo , Yifan Zhang , Hongshu Wang , Yufan Cai , Zhe Hou , Jing Sun , Jin Song Dong

Large Language Model (LLM)-based multi-agent systems are increasingly applied to automate computational workflows in science and engineering. However, how inter-agent dynamics influence reasoning quality and verification reliability remains…

Artificial Intelligence · Computer Science 2025-11-07 Chuan Tian , Yilei Zhang

Modern software development pipelines face growing challenges in securing large codebases with extensive dependencies. Static analysis tools like Bandit are effective at vulnerability detection but suffer from high false positives and lack…

Cryptography and Security · Computer Science 2025-09-23 Jugal Gajjar , Kamalasankari Subramaniakuppusamy , Relsy Puthal , Kaustik Ranaware

Code translation transforms code between programming languages while preserving functionality, which is critical in software development and maintenance. While traditional learning-based code translation methods have limited effectiveness…

Software Engineering · Computer Science 2026-04-08 Zhiqiang Yuan , Weitong Chen , Hanlin Wang , Xin Peng , Zhenpeng Chen , Yiling Lou

Verification using SystemVerilog assertions (SVA) is one of the most popular methods for detecting circuit design vulnerabilities. However, with the globalization of integrated circuit design and the continuous upgrading of security…

Cryptography and Security · Computer Science 2025-07-23 Rui Guo , Avinash Ayalasomayajula , Henian Li , Jingbo Zhou , Sujan Kumar Saha , Farimah Farahmandi

Large language models (LLMs) have demonstrated remarkable progress in code generation, but many existing benchmarks are approaching saturation and offer little guarantee on the trustworthiness of the generated programs. To improve…

Software Engineering · Computer Science 2025-10-08 Xun Deng , Sicheng Zhong , Barış Bayazıt , Andreas Veneris , Fan Long , Xujie Si

As the complexity of the HPC storage stack rapidly grows, domain scientists face increasing challenges in effectively utilizing HPC storage systems to achieve their desired I/O performance. To identify and address I/O issues, scientists…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-03-02 Chris Egersdoerfer , Arnav Sareen , Jean Luca Bez , Suren Byna , Dongkuan Xu , Dong Dai

Kubernetes has become the foundation of modern cloud-native infrastructure, yet its management remains complex and fragmented. Administrators must navigate a vast API surface, manage heterogeneous workloads, and coordinate tasks across…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-03 Mohsen Seyedkazemi Ardebili , Andrea Bartolini

Engineering problem solving is central to real-world decision-making, requiring mathematical formulations that not only represent complex problems but also produce feasible solutions under data and physical constraints. Unlike mathematical…

Artificial Intelligence · Computer Science 2026-05-05 Xiyuan Zhou , Ruixi Zou , Xinlei Wang , Yuheng Cheng , Yan Xu , Junhua Zhao , Jinjin Gu

Software logging is critical for system observability, yet developers face a dual crisis of costly overlogging and risky underlogging. Existing automated logging tools often overlook the fundamental whether-to-log decision and struggle with…

Software Engineering · Computer Science 2025-11-25 Renyi Zhong , Yintong Huo , Wenwei Gu , Yichen Li , Michael R. Lyu

We present OpenComputer, a verifier-grounded framework for constructing verifiable software worlds for computer-use agents. OpenComputer integrates four components: (1) app-specific state verifiers that expose structured inspection…

Artificial Intelligence · Computer Science 2026-05-20 Jinbiao Wei , Qianran Ma , Yilun Zhao , Xiao Zhou , Kangqi Ni , Guo Gan , Arman Cohan

Coverage closure is a critical requirement in Integrated Chip (IC) development process and key metric for verification sign-off. However, traditional exhaustive approaches often fail to achieve full coverage within project timelines. This…

Artificial Intelligence · Computer Science 2026-03-25 Sivaram Pothireddypalli , Ashish Raman , Deepak Narayan Gadde , Aman Kumar