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Garside et al. use event history methods to analyze topological data. We provide additional background on persistent homology to contrast the hazard estimators used by Garside et al. with traditional approaches in topological data analysis.…

Statistics Theory · Mathematics 2022-05-18 Peter Bubenik

We introduce an statistical mechanical formalism for the study of discrete-time stochastic processes with which we prove: (i) General properties of extremal chains, including triviality on the tail $\sigma$-algebra, short-range…

Probability · Mathematics 2007-05-23 Roberto Fernandez , Gregory Maillard

We establish a new theory which gives a unified topological approach to data science, by being applicable both to point cloud data and to graph data, including networks beyond pairwise interactions. We generalize simplicial complexes and…

Algebraic Topology · Mathematics 2021-04-01 Jelena Grbić , Jie Wu , Kelin Xia , Guo-Wei Wei

One of the paramount challenges in neuroscience is to understand the dynamics of individual neurons and how they give rise to network dynamics when interconnected. Historically, researchers have resorted to graph theory, statistics, and…

Neurons and Cognition · Quantitative Biology 2019-02-08 Jean-Baptiste Bardin , Gard Spreemann , Kathryn Hess

Features such as photon rings, jets, or hot. spots can leave particular topological signatures in a black hole image. As such, topological data analysis can be used to characterize images resulting from high resolution observations…

High Energy Astrophysical Phenomena · Physics 2022-10-11 Pierre Christian , Chi-kwan Chan , Anthony Hsu , Feryal Ozel , Dimitrios Psaltis , Iniyan Natarajan

Stochastic models that incorporate birth, death and immigration (also called birth-death and innovation models) are ubiquitous and applicable to many research topics such as quantifying species sizes in ecological populations, describing…

Populations and Evolution · Quantitative Biology 2026-05-12 Renaud Dessalles , Maria D'Orsogna , Tom Chou

This paper proposes a selection strategy for enhancing population diversity in data-driven topology design (DDTD), a topology optimization framework based on evolutionary algorithms (EAs) using a deep generative model. While population…

Optimization and Control · Mathematics 2024-10-21 Taisei Kii , Kentaro Yaji , Hiroshi Teramoto , Kikuo Fujita

Topological data analysis is a powerful tool for describing topological signatures in real world data. An important challenge in topological data analysis is matching significant topological signals across distinct systems. In geometry and…

Algebraic Topology · Mathematics 2025-02-19 Stephen Y Zhang , Michael P H Stumpf , Tom Needham , Agnese Barbensi

Complex systems, in many different scientific sectors, show coarse-grain properties with simple growth laws with respect to fundamental microscopic algorithms. We propose a classification scheme of growth laws which includes human aging,…

Biological Physics · Physics 2012-07-17 P. Castorina , P. Blanchard

This paper presents the first approach to visualize the importance of topological features that define classes of data. Topological features, with their ability to abstract the fundamental structure of complex data, are an integral…

Machine Learning · Computer Science 2023-09-26 Yu Qin , Brittany Terese Fasy , Carola Wenk , Brian Summa

We perform topological data analysis on the internal states of convolutional deep neural networks to develop an understanding of the computations that they perform. We apply this understanding to modify the computations so as to (a) speed…

Machine Learning · Computer Science 2018-11-06 Gunnar Carlsson , Rickard Brüel Gabrielsson

Topological data analysis uses tools from topology -- the mathematical area that studies shapes -- to create representations of data. In particular, in persistent homology, one studies one-parameter families of spaces associated with data,…

Machine Learning · Computer Science 2020-12-01 Guido Montúfar , Nina Otter , Yuguang Wang

Multiplexed imaging allows multiple cell types to be simultaneously visualised in a single tissue sample, generating unprecedented amounts of spatially-resolved, biological data. In topological data analysis, persistent homology provides…

Quantitative Methods · Quantitative Biology 2025-05-06 Maria Torras-Pérez , Iris H. R. Yoon , Praveen Weeratunga , Ling-Pei Ho , Helen M. Byrne , Ulrike Tillmann , Heather A. Harrington

The purpose of this note is twofold: firstly to improve the known results on variation of extreme eigenvalues of birth and death matrices and random walk matrices; and secondly to progress towards the solution of a thirty years old open…

Probability · Mathematics 2019-06-21 K. Castillo , I. Zaballa

Motivated by questions about simplification of topology, we take a discrete approach to the dependency of simplifying operations, using methods based on combinatorial gradient dynamics. We interpret the filter in persistent homology as a…

Algebraic Topology · Mathematics 2026-05-26 Herbert Edelsbrunner , Michał Lipiński , Marian Mrozek , Manuel Soriano-Trigueros

Existing research highlights the crucial role of topological priors in image segmentation, particularly in preserving essential structures such as connectivity and genus. Accurately capturing these topological features often requires…

Computer Vision and Pattern Recognition · Computer Science 2026-01-19 Wenxiao Li , Xue-Cheng Tai , Jun Liu

Persistent homology probes topological properties from point clouds and functions. By looking at multiple scales simultaneously, one can record the births and deaths of topological features as the scale varies. In this paper we use a…

Statistical analysis on object data presents many challenges. Basic summaries such as means and variances are difficult to compute. We apply ideas from topology to study object data. We present a framework for using persistence landscapes…

Methodology · Statistics 2019-12-12 Vic Patrangenaru , Peter Bubenik , Robert L. Paige , Daniel Osborne

A special subcomplex of the singular chain complex for a topological space, historically called oriented singular chain complex is used here with the new name "alternative" singular chain complex. It was already known that this subcomplex…

Algebraic Topology · Mathematics 2017-05-30 Taliya Sahihi , Homayoon Eshraghi , Ali Taghavi

In this paper, we advance the network theory of aging and mortality by developing a causal mathematical model for the mortality rate. First, we show that in large networks, where health deficits accumulate at nodes representing health…

Quantitative Methods · Quantitative Biology 2024-12-18 Valentin Flietner , Bernd Heidergott , Frank den Hollander , Ines Lindner , Azadeh Parvaneh , Holger Strulik
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