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A topos theoretic generalisation of the category of sets allows for modelling spaces which vary according to time intervals. Persistent homology, or more generally, persistence is a central tool in topological data analysis, which examines…

Rings and Algebras · Mathematics 2015-06-23 João Pita Costa , Mikael Vejdemo Johansson , Primož Škraba

Topology applied to real world data using persistent homology has started to find applications within machine learning, including deep learning. We present a differentiable topology layer that computes persistent homology based on level set…

Persistence diagrams are common descriptors of the topological structure of data appearing in various classification and regression tasks. They can be generalized to Radon measures supported on the birth-death plane and endowed with an…

Computational Geometry · Computer Science 2022-12-19 Alex Elchesen , Iryna Hartsock , Jose A. Perea , Tatum Rask

In this article we introduce a definition of topological minimal sets, which is a generalization of that of Mumford-Shah-minimal sets. We prove some general properties as well as two existence theorems for topological minimal sets. As an…

Classical Analysis and ODEs · Mathematics 2011-03-22 Xiangyu Liang

We propose a neural network-based approach to topology optimization that aims to reduce the use of support structures in additive manufacturing. Our approach uses a network architecture that allows the simultaneous determination of an…

Machine Learning · Computer Science 2022-10-05 Hongrui Chen , Aditya Joglekar , Kate S. Whitefoot , Levent Burak Kara

The concept of topological persistence, introduced recently in computational topology, finds applications in studying a map in relation to the topology of its domain. Since its introduction, it has been extended and generalized in various…

Algebraic Topology · Mathematics 2015-03-17 Dan Burghelea , Tamal K. Dey , Du Dong

A birth and death process is a continuous-time Markov chain with the minimal state space $\mathbb N$, whose transition matrix is standard and whose density matrix is the given birth-death matrix. Birth and death process is unique if and…

Probability · Mathematics 2024-08-20 Liping Li

Topological statistics, in the form of persistence diagrams, are a class of shape descriptors that capture global structural information in data. The mapping from data structures to persistence diagrams is almost everywhere differentiable,…

Machine Learning · Statistics 2021-02-24 Elchanan Solomon , Alexander Wagner , Paul Bendich

The concept of random deaths in a computational model for population dynamics is critically examined. We claim that it is just an artifact, albeit useful, of computational models to limit the size of the populations and has no biological…

Statistical Mechanics · Physics 2007-05-23 J. S. Sa' Martins , S. Cebrat

The persistent homology with coefficients in a field F coincides with the same for cohomology because of duality. We propose an implementation of a recently introduced algorithm for persistent cohomology that attaches annotation vectors…

Computational Geometry · Computer Science 2020-01-09 Jean-Daniel Boissonnat , Tamal K. Dey , Clément Maria

We analyze algorithmic and computational aspects of biological phenomena, such as replication and programmed death, in the context of machine learning. We use two different measures of neuron efficiency to develop machine learning…

Neural and Evolutionary Computing · Computer Science 2022-07-12 Andrey Grabovsky , Vitaly Vanchurin

In this paper one presents the extension of the transient analysis of the class of continuous-time birth and death processes defined on non-negative integers with special transitions from and to the origin. From the origin transitions can…

A topology optimization formulation including a model of the layer-by-layer additive manufacturing (AM) process is considered. Defined as a multi-objective minimization problem, the formulation accounts for the performance and cost of both…

Numerical Analysis · Mathematics 2022-06-29 G. A. Haveroth , C-J. Thore , M. R. Correa , R. F. Ausas , S. Jakobsson , J. A. Cuminato , A. Klarbring

Persistent homology is used to track the appearance and disappearance of features as we move through a nested sequence of topological spaces. Equating the nested sequence to a filtration and the appearance and disappearance of features to…

Statistics Theory · Mathematics 2020-12-17 Kathryn Garside , Aida Gjoka , Robin Henderson , Hollie Johnson , Irina Makarenko

A topology preserving skeleton is a synthetic representation of an object that retains its topology and many of its significant morphological properties. The process of obtaining the skeleton, referred to as skeletonization or thinning, is…

Computer Vision and Pattern Recognition · Computer Science 2015-06-17 Paweł Dłotko , Ruben Specogna

Persistent homology is a technique recently developed in algebraic and computational topology well-suited to analysing structure in complex, high-dimensional data. In this paper, we exposit the theory of persistent homology from first…

Applications · Statistics 2016-11-30 Matthew Pietrosanu

In this paper we review some results on time-homogeneous birth-death processes. Specifically, for truncated birth-death processes with two absorbing or two reflecting endpoints, we recall the necessary and sufficient conditions on the…

Probability · Mathematics 2015-09-09 Antonio Di Crescenzo , Barbara Martinucci

Persistence-based topological optimization deforms a point cloud $X \subset \mathbb{R}^d$ by minimizing objectives of the form $L(X) = \ell(\mathrm{Dgm}(X))$, where $\mathrm{Dgm}(X)$ is a persistence diagram. In practice, optimization is…

Computational Geometry · Computer Science 2026-05-13 Abderrahim Bendahi , Alexandre Duplessis , Arnaud Fickinger

A birth-death process is a continuous-time Markov chain that counts the number of particles in a system over time. In the general process with $n$ current particles, a new particle is born with instantaneous rate $\lambda_n$ and a particle…

Populations and Evolution · Quantitative Biology 2012-10-11 Forrest W. Crawford , Marc A. Suchard

We apply modern methods in computational topology to the task of discovering and characterizing phase transitions. As illustrations, we apply our method to four two-dimensional lattice spin models: the Ising, square ice, XY, and…

Statistical Mechanics · Physics 2021-10-04 Alex Cole , Gregory J. Loges , Gary Shiu