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Graph-level representations are critical in various real-world applications, such as predicting the properties of molecules. But in practice, precise graph annotations are generally very expensive and time-consuming. To address this issue,…

Machine Learning · Computer Science 2022-07-26 Shuai Lin , Pan Zhou , Zi-Yuan Hu , Shuojia Wang , Ruihui Zhao , Yefeng Zheng , Liang Lin , Eric Xing , Xiaodan Liang

Contrastive learning have been widely used as pretext tasks for self-supervised pre-trained molecular representation learning models in AI-aided drug design and discovery. However, exiting methods that generate molecular views by…

Biomolecules · Quantitative Biology 2023-03-14 Ziqiao Zhang , Ailin Xie , Jihong Guan , Shuigeng Zhou

Due to the presence of the natural gap between Knowledge Graph (KG) structures and the natural language, the effective integration of holistic structural information of KGs with Large Language Models (LLMs) has emerged as a significant…

Computation and Language · Computer Science 2025-01-31 Qika Lin , Tianzhe Zhao , Kai He , Zhen Peng , Fangzhi Xu , Ling Huang , Jingying Ma , Mengling Feng

Large language models (LLMs) exhibit strong semantic understanding, yet struggle when user instructions involve ambiguous or conceptually misaligned terms. We propose the Language Graph Model (LGM) to enhance conceptual clarity by…

Computation and Language · Computer Science 2025-11-06 Wenchang Lei , Ping Zou , Yue Wang , Feng Sun , Lei Zhao

Link prediction in knowledge graphs requires integrating structural information and semantic context to infer missing entities. While large language models offer strong generative reasoning capabilities, their limited exploitation of…

Computation and Language · Computer Science 2025-09-09 Mengxue Yang , Chun Yang , Jiaqi Zhu , Jiafan Li , Jingqi Zhang , Yuyang Li , Ying Li

Graph contrastive learning has emerged as a powerful technique for learning graph representations that are robust and discriminative. However, traditional approaches often neglect the critical role of subgraph structures, particularly the…

Machine Learning · Computer Science 2025-03-14 Tianhao Peng , Xuhong Li , Haitao Yuan , Yuchen Li , Haoyi Xiong

The similarity of graph structures, such as Meaning Representations (MRs), is often assessed via structural matching algorithms, such as Smatch (Cai and Knight, 2013). However, Smatch involves a combinatorial problem that suffers from…

Computation and Language · Computer Science 2023-06-02 Juri Opitz , Philipp Meier , Anette Frank

This paper addresses the performance bottlenecks of existing text-driven image generation methods in terms of semantic alignment accuracy and structural consistency. A high-fidelity image generation method is proposed by integrating…

Computer Vision and Pattern Recognition · Computer Science 2025-08-15 Danyi Gao

A scene graph is a semantic representation that expresses the objects, attributes, and relationships between objects in a scene. Scene graphs play an important role in many cross modality tasks, as they are able to capture the interactions…

Computer Vision and Pattern Recognition · Computer Science 2022-09-20 Xuming Hu , Zhijiang Guo , Yu Fu , Lijie Wen , Philip S. Yu

Despite significant progress in Text-to-Image (T2I) generative models, even lengthy and complex text descriptions still struggle to convey detailed controls. In contrast, Layout-to-Image (L2I) generation, aiming to generate realistic and…

Computer Vision and Pattern Recognition · Computer Science 2024-03-14 Chengyou Jia , Minnan Luo , Zhuohang Dang , Guang Dai , Xiaojun Chang , Mengmeng Wang , Jingdong Wang

In this paper, we introduce LInK, a novel framework that integrates contrastive learning of performance and design space with optimization techniques for solving complex inverse problems in engineering design with discrete and continuous…

Machine Learning · Computer Science 2025-02-11 Amin Heyrani Nobari , Akash Srivastava , Dan Gutfreund , Kai Xu , Faez Ahmed

Molecular structure elucidation from spectra is a fundamental challenge in molecular science. Conventional approaches rely heavily on expert interpretation and lack scalability, while retrieval-based machine learning approaches remain…

Machine Learning · Computer Science 2025-11-06 Liang Wang , Yu Rong , Tingyang Xu , Zhenyi Zhong , Zhiyuan Liu , Pengju Wang , Deli Zhao , Qiang Liu , Shu Wu , Liang Wang , Yang Zhang

Molecular representation learning plays a crucial role in various downstream tasks, such as molecular property prediction and drug design. To accurately represent molecules, Graph Neural Networks (GNNs) and Graph Transformers (GTs) have…

Machine Learning · Computer Science 2025-02-07 Jingjing Hu , Dan Guo , Zhan Si , Deguang Liu , Yunfeng Diao , Jing Zhang , Jinxing Zhou , Meng Wang

Large language models ($\textbf{LLMs}$) have emerged as a powerful method for discovery. Instead of utilizing numerical data, LLMs utilize associated variable $\textit{semantic metadata}$ to predict variable relationships. Simultaneously,…

Machine Learning · Computer Science 2025-04-15 Alex Havrilla , David Alvarez-Melis , Nicolo Fusi

Recent advances in generative models have highlighted the need for robust detectors capable of distinguishing real images from AI-generated images. While existing methods perform well on known generators, their performance often declines…

Computer Vision and Pattern Recognition · Computer Science 2025-08-05 Kuo Shi , Jie Lu , Shanshan Ye , Guangquan Zhang , Zhen Fang

Generative Adversarial Networks (GANs) are powerful tools for reconstructing Compressed Sensing Magnetic Resonance Imaging (CS-MRI). However most recent works lack exploration of structure information of MRI images that is crucial for…

Computer Vision and Pattern Recognition · Computer Science 2019-03-06 Zhongnian Li , Tao Zhang , Peng Wan , Daoqiang Zhang

Synthetic data generation is an important application of machine learning in the field of medical imaging. While existing approaches have successfully applied fine-tuned diffusion models for synthesizing medical images, we explore potential…

Computer Vision and Pattern Recognition · Computer Science 2024-10-04 Lakshmi Nair

We introduce Permutation and Structured Perturbation Inference (PSPI), a new problem formulation that abstracts many graph matching tasks that arise in systems biology. PSPI can be viewed as a robust formulation of the permutation inference…

Artificial Intelligence · Computer Science 2021-04-05 Raghvendra Mall , Shameem A. Parambath , Han Yufei , Ting Yu , Sanjay Chawla

Improving the performance on an imbalanced training set is one of the main challenges in nowadays Machine Learning. One way to augment and thus re-balance the image dataset is through existing deep generative models, like class-conditional…

Image and Video Processing · Electrical Eng. & Systems 2023-03-10 Chenqi Guo , Fabian Benitez-Quiroz , Qianli Feng , Aleix Martinez

Biphasic face photo-sketch synthesis has significant practical value in wide-ranging fields such as digital entertainment and law enforcement. Previous approaches directly generate the photo-sketch in a global view, they always suffer from…

Computer Vision and Pattern Recognition · Computer Science 2023-12-05 Xingqun Qi , Muyi Sun , Zijian Wang , Jiaming Liu , Qi Li , Fang Zhao , Shanghang Zhang , Caifeng Shan