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We introduce a class of paired binary matrices called admixed arrays, which arise in analyses of large-scale genetic data and can be viewed as weighted edge colorings of complete bipartite graphs. This combinatorial structure gives rise to…

Combinatorics · Mathematics 2026-04-13 Alan J. Aw

Causal discovery with latent variables is a fundamental task. Yet most existing methods rely on strong structural assumptions, such as enforcing specific indicator patterns for latents or restricting how they can interact with others. We…

Machine Learning · Computer Science 2026-03-06 Haoyue Dai , Immanuel Albrecht , Peter Spirtes , Kun Zhang

An important problem in the field of bioinformatics is to identify interactive effects among profiled variables for outcome prediction. In this paper, a logistic regression model with pairwise interactions among a set of binary covariates…

Artificial Intelligence · Computer Science 2016-12-30 Easton Li Xu , Xiaoning Qian , Tie Liu , Shuguang Cui

Model selection and learning the structure of graphical models from the data sample constitutes an important field of probabilistic graphical model research, as in most of the situations the structure is unknown and has to be learnt from…

Methodology · Statistics 2016-03-14 Niharika Gauraha

The graphical structure of Probabilistic Graphical Models (PGMs) represents the conditional independence (CI) relations that hold in the modeled distribution. Every separator in the graph represents a conditional independence relation in…

Artificial Intelligence · Computer Science 2025-01-28 Batya Kenig

Estimation of the conditional independence graph (CIG) of high-dimensional multivariate Gaussian time series from multi-attribute data is considered. Existing methods for graph estimation for such data are based on single-attribute models…

Machine Learning · Statistics 2025-12-09 Jitendra K. Tugnait

Graph neural networks are often used to model interacting dynamical systems since they gracefully scale to systems with a varying and high number of agents. While there has been much progress made for deterministic interacting systems,…

Machine Learning · Computer Science 2023-05-04 Andreas Look , Melih Kandemir , Barbara Rakitsch , Jan Peters

We propose a test of independence of two multivariate random vectors, given a sample from the underlying population. Our approach, which we call MINT, is based on the estimation of mutual information, whose decomposition into joint and…

Methodology · Statistics 2017-11-20 Thomas B. Berrett , Richard J. Samworth

Recently there has been increased interest in fitting generative graph models to real-world networks. In particular, Bl\"asius et al. have proposed a framework for systematic evaluation of the expressivity of random graph models. We extend…

Social and Information Networks · Computer Science 2024-05-14 Benjamin Dayan , Marc Kaufmann , Ulysse Schaller

This paper studies the problem of recursively estimating the weighted adjacency matrix of a network out of a temporal sequence of binary-valued observations. The observation sequence is generated from nonlinear networked dynamics in which…

Systems and Control · Electrical Eng. & Systems 2019-12-06 Yu Xing , Xingkang He , Haitao Fang , Karl Henrik Johansson

Gaussian graphical models are a popular tool to learn the dependence structure in the form of a graph among variables of interest. Bayesian methods have gained in popularity in the last two decades due to their ability to simultaneously…

Statistics Theory · Mathematics 2019-04-02 Yabo Niu , Debdeep Pati , Bani Mallick

AThe paper gives a few arguments in favour of the use of chain graphs for description of probabilistic conditional independence structures. Every Bayesian network model can be equivalently introduced by means of a factorization formula with…

Artificial Intelligence · Computer Science 2013-02-01 Milan Studeny

We study networked binary classification on a directed acyclic graph (DAG) where each agent observes only a subset of the feature columns of a shared dataset. Agents act sequentially along the DAG: each receives prediction columns from its…

Graphical models have proven to be powerful tools for representing high-dimensional systems of random variables. One example of such a model is the undirected graph, in which lack of an edge represents conditional independence between two…

Probability · Mathematics 2013-10-11 Dhafer Malouche , Bala Rajaratnam , Benjamin T. Rolfs

We consider testing marginal independence versus conditional independence in a trivariate Gaussian setting. The two models are non-nested and their intersection is a union of two marginal independences. We consider two sequences of such…

Statistics Theory · Mathematics 2020-10-23 F. Richard Guo , Thomas S. Richardson

Conditional independence models in the Gaussian case are algebraic varieties in the cone of positive definite covariance matrices. We study these varieties in the case of Bayesian networks, with a view towards generalizing the recursive…

Algebraic Geometry · Mathematics 2007-05-23 Seth Sullivant

For a directed acyclic graph, there are two known criteria to decide whether any specific conditional independence statement is implied for all distributions factorized according to the given graph. Both criteria are based on special types…

Statistics Theory · Mathematics 2009-04-03 Giovanni M. Marchetti , Nanny Wermuth

We extend the classical edge-triangle Exponential Random Graph Model (ERGM) to an inhomogeneous setting in which vertices carry types determined by an underlying partition. This leads to a block-structured ERGM where interaction parameters…

Probability · Mathematics 2026-02-19 Elena Magnanini

Biologically-informed neural networks (BINNs), an extension of physics-informed neural networks [1], are introduced and used to discover the underlying dynamics of biological systems from sparse experimental data. In the present work, BINNs…

Quantitative Methods · Quantitative Biology 2021-01-27 John H. Lagergren , John T. Nardini , Ruth E. Baker , Matthew J. Simpson , Kevin B. Flores

Initial work on variational autoencoders assumed independent latent variables with simple distributions. Subsequent work has explored incorporating more complex distributions and dependency structures: including normalizing flows in the…

Machine Learning · Computer Science 2022-04-27 Jacobie Mouton , Steve Kroon