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Molecular optimization is a central task in drug discovery that requires precise structural reasoning and domain knowledge. While large language models (LLMs) have shown promise in generating high-level editing intentions in natural…

Machine Learning · Computer Science 2025-10-17 Wenyu Zhu , Chengzhu Li , Xiaohe Tian , Yifan Wang , Yinjun Jia , Jianhui Wang , Bowen Gao , Ya-Qin Zhang , Wei-Ying Ma , Yanyan Lan

Molecular property prediction is a crucial foundation for drug discovery. In recent years, pre-trained deep learning models have been widely applied to this task. Some approaches that incorporate prior biological domain knowledge into the…

Machine Learning · Computer Science 2024-08-20 Tianyu Zhang , Yuxiang Ren , Chengbin Hou , Hairong Lv , Xuegong Zhang

Evaluation is the baton for the development of large language models. Current evaluations typically employ a single-item assessment paradigm for each atomic test objective, which struggles to discern whether a model genuinely possesses the…

Computation and Language · Computer Science 2024-08-08 Boxi Cao , Mengjie Ren , Hongyu Lin , Xianpei Han , Feng Zhang , Junfeng Zhan , Le Sun

Human preference alignment can greatly enhance Multimodal Large Language Models (MLLMs), but collecting high-quality preference data is costly. A promising solution is the self-evolution strategy, where models are iteratively trained on…

Machine Learning · Computer Science 2024-12-23 Wentao Tan , Qiong Cao , Yibing Zhan , Chao Xue , Changxing Ding

Recent advances in multimodal large language models (MLLMs) have shown impressive reasoning capabilities. However, further enhancing existing MLLMs necessitates high-quality vision-language datasets with carefully curated task complexities,…

Computer Vision and Pattern Recognition · Computer Science 2025-07-30 Xiuwei Chen , Wentao Hu , Hanhui Li , Jun Zhou , Zisheng Chen , Meng Cao , Yihan Zeng , Kui Zhang , Yu-Jie Yuan , Jianhua Han , Hang Xu , Xiaodan Liang

Trajectory prediction is a crucial task in modeling human behavior, especially in fields as social robotics and autonomous vehicle navigation. Traditional heuristics based on handcrafted rules often lack accuracy, while recently proposed…

Artificial Intelligence · Computer Science 2025-05-08 Zhikai Zhao , Chuanbo Hua , Federico Berto , Kanghoon Lee , Zihan Ma , Jiachen Li , Jinkyoo Park

Many applications seek to optimize LLM outputs at test time by iteratively proposing, scoring, and refining candidates over a discrete output space. Existing methods use a calibrated scalar evaluator for the target objective to guide…

Machine Learning · Computer Science 2026-02-27 Sweta Karlekar , Carolina Zheng , Magnus Saebo , Nicolas Beltran-Velez , Shuyang Yu , John Bowlan , Michal Kucer , David Blei

Despite their success in many domains, large language models (LLMs) remain under-studied in scenarios requiring optimal decision-making under uncertainty. This is crucial as many real-world applications, ranging from personalized…

Machine Learning · Computer Science 2025-07-15 Allen Nie , Yi Su , Bo Chang , Jonathan N. Lee , Ed H. Chi , Quoc V. Le , Minmin Chen

Deep learning is now widely used in drug discovery, providing significant acceleration and cost reduction. As the most fundamental building block, molecular representation is essential for predicting molecular properties to enable various…

Machine Learning · Computer Science 2024-04-22 Haoqiang Guo , Sendong Zhao , Haochun Wang , Yanrui Du , Bing Qin

Understanding molecules is key to understanding organisms and driving advances in drug discovery, requiring interdisciplinary knowledge across chemistry and biology. Although large molecular language models have achieved notable success in…

Machine Learning · Computer Science 2025-10-03 Dongki Kim , Wonbin Lee , Sung Ju Hwang

Large Language Models (LLMs) have demonstrated remarkable capabilities across diverse domains, including programming, planning, and decision-making. However, their performance often degrades when faced with highly complex problem instances…

Artificial Intelligence · Computer Science 2025-08-21 Yang Cheng , Zilai Wang , Weiyu Ma , Wenhui Zhu , Yue Deng , Jian Zhao

Recent advances in large language models (LLMs) have led to models that tackle diverse molecular tasks, such as chemical reaction prediction and molecular property prediction. Large-scale molecular instruction-tuning datasets have enabled…

Machine Learning · Computer Science 2025-05-27 Chanhui Lee , Hanbum Ko , Yuheon Song , YongJun Jeong , Rodrigo Hormazabal , Sehui Han , Kyunghoon Bae , Sungbin Lim , Sungwoong Kim

Effective query-item relevance modeling is pivotal for enhancing user experience and safeguarding user satisfaction in e-commerce search systems. Recently, benefiting from the vast inherent knowledge, Large Language Model (LLM) approach…

Information Retrieval · Computer Science 2025-02-11 Gang Zhao , Ximing Zhang , Chenji Lu , Hui Zhao , Tianshu Wu , Pengjie Wang , Jian Xu , Bo Zheng

Molecular property prediction is crucial for drug discovery and materials science, yet existing approaches suffer from limited interpretability, poor cross-task generalization, and lack of chemical reasoning capabilities. Traditional…

Machine Learning · Computer Science 2025-10-20 Jiaxi Zhuang , Yaorui Shi , Jue Hou , Yunong He , Mingwei Ye , Mingjun Xu , Yuming Su , Linfeng Zhang , Ying Qian , Linfeng Zhang , Guolin Ke , Hengxing Cai

Large language models (LLMs) hold considerable potential for advancing scientific discovery, yet systematic assessment of their dynamic reasoning in real-world research remains limited. Current scientific evaluation benchmarks predominantly…

Computation and Language · Computer Science 2026-03-27 Taolin Han , Shuang Wu , Jinghang Wang , Yuhao Zhou , Renquan Lv , Bing Zhao , Wei Hu

Natural lifeforms specialise to their environmental niches across many levels; from low-level features such as DNA and proteins, through to higher-level artefacts including eyes, limbs, and overarching body plans. We propose Multi-Level…

Neuroevolution is one of the methodologies that can be used for learning optimal architecture during training. It uses evolutionary algorithms to generate the topology of artificial neural networks and its parameters. The main benefits are…

Neural and Evolutionary Computing · Computer Science 2022-08-30 M. Pietroń , D. Żurek , K. Faber , R. Corizzo

Goal-oriented de novo molecule design, namely generating molecules with specific property or substructure constraints, is a crucial yet challenging task in drug discovery. Existing methods, such as Bayesian optimization and reinforcement…

Computational Engineering, Finance, and Science · Computer Science 2025-02-28 Chuanliu Fan , Ziqiang Cao , Zicheng Ma , Nan Yu , Yimin Peng , Jun Zhang , Yiqin Gao , Guohong Fu

Large Language Models (LLMs) are used for Register-Transfer Level (RTL) code generation, but they face two main challenges: functional correctness and Power, Performance, and Area (PPA) optimization. Iterative, feedback-based methods…

Neural and Evolutionary Computing · Computer Science 2025-10-27 Kyungjun Min , Kyumin Cho , Junhwan Jang , Seokhyeong Kang

Neural Architecture Search (NAS) aims to automatically discover high-performing deep neural network (DNN) architectures. However, conventional algorithm-driven NAS relies on carefully hand-crafted search spaces to ensure executability,…

Machine Learning · Computer Science 2026-04-21 Masakazu Yoshimura , Zitang Sun , Yuiko Sakuma , Junji Otsuka , Atsushi Irie , Takeshi Ohashi