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In this work, we study whether enforcing strict compositional structure in sequence embeddings yields meaningful geometric organization when applied to protein-protein interaction networks. Using Event2Vec, an additive sequence embedding…

Machine Learning · Computer Science 2026-04-02 Antonin Sulc

Neural dynamical systems with stable attractor structures, such as point attractors and continuous attractors, are hypothesized to underlie meaningful temporal behavior that requires working memory. However, working memory may not support…

Neurons and Cognition · Quantitative Biology 2023-08-25 Il Memming Park , Ábel Ságodi , Piotr Aleksander Sokół

Deep neural networks (DNNs) have revolutionized the field of artificial intelligence and have achieved unprecedented success in cognitive tasks such as image and speech recognition. Training of large DNNs, however, is computationally…

Spike Timing Dependent Plasticity is form of learning that has been demonstrated in real cortical tissue, but attempts to use it for artificial systems have not produced good results. This paper seeks to remedy this with two significant…

Neural and Evolutionary Computing · Computer Science 2020-07-01 Simon Davidson , Stephen B. Furber , Oliver Rhodes

Symmetry is omnipresent in nature and perceived by the visual system of many species, as it facilitates detecting ecologically important classes of objects in our environment. Symmetry perception requires abstraction of long-range spatial…

Computer Vision and Pattern Recognition · Computer Science 2022-01-26 Shobhita Sundaram , Darius Sinha , Matthew Groth , Tomotake Sasaki , Xavier Boix

Learning useful information across long time lags is a critical and difficult problem for temporal neural models in tasks such as language modeling. Existing architectures that address the issue are often complex and costly to train. The…

Computation and Language · Computer Science 2017-07-18 Alexander G. Ororbia , Tomas Mikolov , David Reitter

FPN is a common component used in object detectors, it supplements multi-scale information by adjacent level features interpolation and summation. However, due to the existence of nonlinear operations and the convolutional layers with…

Computer Vision and Pattern Recognition · Computer Science 2020-12-07 Jialiang Ma , Bin Chen

Coordinate transformation models often fail to account for nonlinear and spatially dependent distortions, leading to significant residual errors in geospatial applications. Here we propose a residual-based neural correction strategy, in…

Recurrent neural networks can learn complex transduction problems that require maintaining and actively exploiting a memory of their inputs. Such models traditionally consider memory and input-output functionalities indissolubly entangled.…

Machine Learning · Computer Science 2018-11-09 Davide Bacciu , Antonio Carta , Alessandro Sperduti

We are proposing an extension of the recursive neural network that makes use of a variant of the long short-term memory architecture. The extension allows information low in parse trees to be stored in a memory register (the `memory cell')…

Computation and Language · Computer Science 2015-04-21 Phong Le , Willem Zuidema

Working memory -- the ability to store and recall precise temporal patterns of neural activity -- remains an open challenge for spiking neural networks (SNNs). We propose a recurrent SNN of $N$ neurons in which each synapse is equipped with…

Neurons and Cognition · Quantitative Biology 2026-04-16 Laurent U Perrinet

Transformer architectures have achieved remarkable success across language, vision, and multimodal tasks, and there is growing demand for them to address in-context compositional learning tasks. In these tasks, models solve the target…

Machine Learning · Computer Science 2025-11-26 Wei Chen , Jingxi Yu , Zichen Miao , Qiang Qiu

Efficient pattern separation in dentate gyrus plays an important role in storing information in the hippocampus. Current knowledge of the structure and function of the hippocampus, entorhinal cortex and dentate gyrus, in pattern separation…

Neurons and Cognition · Quantitative Biology 2018-08-02 Faramarz Faghihi , Homa Samani , Ahmed A. Moustafa

Message passing is the core operation in graph neural networks, where each node updates its embeddings by aggregating information from its neighbors. However, in deep architectures, this process often leads to diminished expressiveness. A…

Machine Learning · Computer Science 2025-11-11 Mohammad Shirzadi , Ali Safarpoor Dehkordi , Ahad N. Zehmakan

There is an increasing need of continual learning in dynamic systems, such as the self-driving vehicle, the surveillance drone, and the robotic system. Such a system requires learning from the data stream, training the model to preserve…

Machine Learning · Computer Science 2019-12-23 Xiaocong Du , Gouranga Charan , Frank Liu , Yu Cao

Associative memory or content addressable memory is an important component function in computer science and information processing and is a key concept in cognitive and computational brain science. Many different neural network…

Neural and Evolutionary Computing · Computer Science 2025-02-19 Anders Lansner , Naresh B Ravichandran , Pawel Herman

The ability to learn continuously from an incoming data stream without catastrophic forgetting is critical for designing intelligent systems. Many existing approaches to continual learning rely on stochastic gradient descent and its…

Machine Learning · Computer Science 2021-03-16 Sandeep Madireddy , Angel Yanguas-Gil , Prasanna Balaprakash

We study a pitfall in the typical workflow for differentially private machine learning. The use of differentially private learning algorithms in a "drop-in" fashion -- without accounting for the impact of differential privacy (DP) noise…

Cryptography and Security · Computer Science 2022-05-16 Wenxuan Bao , Luke A. Bauer , Vincent Bindschaedler

Identifying a coupled dynamical system out of many plausible candidates, each of which could serve as the underlying generator of some observed measurements, is a profoundly ill posed problem that commonly arises when modelling real world…

Neurons and Cognition · Quantitative Biology 2019-09-17 Amirhossein Jafarian , Peter Zeidman , Vladimir Litvak , Karl Friston

The emergence of generative models enables the creation of texts and images tailored to users' preferences. Existing personalized generative models have two critical limitations: lacking a dedicated paradigm for accurate preference…

Information Retrieval · Computer Science 2026-04-23 Yuting Zhang , Ying Sun , Dazhong Shen , Ziwei Xie , Feng Liu , Changwang Zhang , Xiang Liu , Jun Wang , Hui Xiong
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