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From extracting features to generating text, the outputs of large language models (LLMs) typically rely on the final layers, following the conventional wisdom that earlier layers capture only low-level cues. However, our analysis shows that…

Machine Learning · Computer Science 2025-06-17 Oscar Skean , Md Rifat Arefin , Dan Zhao , Niket Patel , Jalal Naghiyev , Yann LeCun , Ravid Shwartz-Ziv

Pretrained molecular encoders have become indispensable in computational chemistry for tasks such as property prediction and molecular generation. However, the standard practice of relying solely on final-layer embeddings for downstream…

Machine Learning · Computer Science 2025-10-16 Luis Pinto

Graphs are a powerful tool for representing and analyzing complex relationships in real-world applications such as social networks, recommender systems, and computational finance. Reasoning on graphs is essential for drawing inferences…

Machine Learning · Computer Science 2023-10-10 Bahare Fatemi , Jonathan Halcrow , Bryan Perozzi

The growing scale of evaluation tasks has led to the widespread adoption of automated evaluation using LLMs, a paradigm known as "LLM-as-a-judge". However, improving its alignment with human preferences without complex prompts or…

Computation and Language · Computer Science 2025-10-17 Peng Lai , Jianjie Zheng , Sijie Cheng , Yun Chen , Peng Li , Yang Liu , Guanhua Chen

Deep neural networks typically rely on the representation produced by their final hidden layer to make predictions, implicitly assuming that this single vector fully captures the semantics encoded across all preceding transformations.…

Machine Learning · Computer Science 2025-11-18 Gennaro Vessio

In-context learning (ICL) enables large language models (LLMs) to adapt to new tasks without weight updates by learning from demonstration sequences. While ICL shows strong empirical performance, its internal representational mechanisms are…

Computation and Language · Computer Science 2025-10-07 Jiachen Jiang , Yuxin Dong , Jinxin Zhou , Zhihui Zhu

Both text-to-image generation and large language models (LLMs) have made significant advancements. However, many text-to-image models still employ the somewhat outdated T5 and CLIP as their text encoders. In this work, we investigate the…

Computer Vision and Pattern Recognition · Computer Science 2025-06-17 Andrew Z. Wang , Songwei Ge , Tero Karras , Ming-Yu Liu , Yogesh Balaji

Large Vision-Language Models (LVLMs) have achieved remarkable success in a wide range of multimodal tasks by integrating pre-trained vision encoders and large language models. However, current LVLMs primarily rely on visual features…

Computer Vision and Pattern Recognition · Computer Science 2025-01-20 Xu Li , Yi Zheng , Haotian Chen , Xiaolei Chen , Yuxuan Liang , Chenghang Lai , Bin Li , Xiangyang Xue

Embedding fusion has emerged as an effective approach for enhancing performance across various NLP tasks. However, systematic guidelines for selecting optimal layers and developing effective fusion strategies for the integration of LLMs…

Computation and Language · Computer Science 2025-04-09 Jiho Gwak , Yuchul Jung

Recently, a number of iterative learning methods have been introduced to improve generalization. These typically rely on training for longer periods of time in exchange for improved generalization. LLF (later-layer-forgetting) is a…

Graph neural networks have been used for a variety of learning tasks, such as link prediction, node classification, and node clustering. Among them, link prediction is a relatively under-studied graph learning task, with current…

Machine Learning · Computer Science 2022-08-29 Xinxing Wu , Qiang Cheng

Electroencephalogram (EEG) signals are vital for automated seizure detection, but their inherent noise makes robust representation learning challenging. Existing graph construction methods, whether correlation-based or learning-based, often…

Artificial Intelligence · Computer Science 2026-05-01 Lincan Li , Zheng Chen , Yushun Dong

Motivated by interpretability and reliability, we investigate whether large language models (LLMs) deploy universal geometric structures to encode discrete, graph-structured knowledge. To this end, we present two complementary experimental…

Machine Learning · Computer Science 2025-11-25 David D. Baek , Yuxiao Li , Max Tegmark

The remarkable capabilities of Large Language Models (LLMs) are overshadowed by their immense computational cost. While recent work has shown that many LLM layers can be reordered or even removed with minimal impact on accuracy, these…

Machine Learning · Computer Science 2026-01-07 Ramón Calvo González , Daniele Paliotta , Matteo Pagliardini , Martin Jaggi , François Fleuret

The application of large language models (LLMs) to graph data has attracted a lot of attention recently. LLMs allow us to use deep contextual embeddings from pretrained models in text-attributed graphs, where shallow embeddings are often…

Artificial Intelligence · Computer Science 2025-02-19 Shima Khoshraftar , Niaz Abedini , Amir Hajian

Protein language models (PLMs) have transformed sequence-based protein analysis, yet most applications rely only on final-layer embeddings, which may overlook biologically meaningful information encoded in earlier layers. We systematically…

Quantitative Methods · Quantitative Biology 2025-12-02 Ajit Kumar , IndraPrakash Jha

Large Language Models (LLMs) excel in English, but their performance degrades significantly on low-resource languages (LRLs) due to English-centric training. While methods like LangBridge align LLMs with multilingual encoders such as the…

We propose the Limited Multi-Label (LML) projection layer as a new primitive operation for end-to-end learning systems. The LML layer provides a probabilistic way of modeling multi-label predictions limited to having exactly k labels. We…

Machine Learning · Computer Science 2019-10-15 Brandon Amos , Vladlen Koltun , J. Zico Kolter

Transformer encoders contextualize token representations by attending to all other tokens at each layer, leading to quadratic increase in compute effort with the input length. In practice, however, the input text of many NLP tasks can be…

Computation and Language · Computer Science 2023-06-01 Jeremiah Milbauer , Annie Louis , Mohammad Javad Hosseini , Alex Fabrikant , Donald Metzler , Tal Schuster

Pre-training Large Language Models (LLMs) on web-scale datasets becomes fundamental for advancing general-purpose AI. In contrast, enhancing their predictive performance on downstream tasks typically involves adapting their knowledge…

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