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We present ENSAM (Equivariant, Normalized, Segment Anything Model), a lightweight and promptable model for universal 3D medical image segmentation. ENSAM combines a SegResNet-based encoder with a prompt encoder and mask decoder in a…

Computer Vision and Pattern Recognition · Computer Science 2025-09-22 Elias Stenhede , Agnar Martin Bjørnstad , Arian Ranjbar

Probabilistic inference offers a principled framework for understanding both behaviour and cortical computation. However, two basic and ubiquitous properties of cortical responses seem difficult to reconcile with probabilistic inference:…

Neurons and Cognition · Quantitative Biology 2017-01-03 Laurence Aitchison , Máté Lengyel

OncoVision is a multimodal AI pipeline that combines mammography images and clinical data for better breast cancer diagnosis. Employing an attention-based encoder-decoder backbone, it jointly segments four ROIs - masses, calcifications,…

Multi-rater medical image segmentation captures the inherent ambiguity of clinical interpretation, where diagnostic boundaries vary across experts and imaging devices. Existing approaches often reduce this diversity to consensus labels or…

Computer Vision and Pattern Recognition · Computer Science 2026-05-12 Sanaz Karimijafarbigloo , Armin Khosravi , Alireza Kheyrkhah , Reza Azad , Mauricio Reyes , Dorit Merhof

Batch effects arising from technical variations in histopathology staining protocols, scanners, and acquisition pipelines pose a persistent challenge for computational pathology, hindering cross-batch generalization and limiting reliable…

Machine Learning · Computer Science 2026-03-02 Xiaolong Zhang , Jianwei Zhang , Selim Sevim , Emek Demir , Ece Eksi , Xubo Song

Medical image segmentation plays a crucial role in clinical medicine, serving as a key tool for auxiliary diagnosis, treatment planning, and disease monitoring. However, traditional segmentation methods such as U-Net are often limited by…

Image and Video Processing · Electrical Eng. & Systems 2025-12-22 Gaoyu Chen , Haixia Pan

We propose an attention mechanism for 3D medical image segmentation. The method, named segmentation-by-detection, is a cascade of a detection module followed by a segmentation module. The detection module enables a region of interest to…

Computer Vision and Pattern Recognition · Computer Science 2017-11-02 Min Tang , Zichen Zhang , Dana Cobzas , Martin Jagersand , Jacob L. Jaremko

Semantic segmentation of electron microscopy (EM) is an essential step to efficiently obtain reliable morphological statistics. Despite the great success achieved using deep convolutional neural networks (CNNs), they still produce coarse…

Computer Vision and Pattern Recognition · Computer Science 2021-01-11 Zhimin Yuan , Xiaofen Ma , Jiajin Yi , Zhengrong Luo , Jialin Peng

Accurately segmenting different organs from medical images is a critical prerequisite for computer-assisted diagnosis and intervention planning. This study proposes a deep learning-based approach for segmenting various organs from CT and…

Structured Illumination Microscopy (SIM) enables rapid, high-contrast optical sectioning of fresh tissue without staining or physical sectioning, making it promising for intraoperative and point-of-care diagnostics. Recent foundation and…

Medical image segmentation is crucial for clinical diagnosis and treatment planning. Traditional methods typically produce a single segmentation mask, failing to capture inherent uncertainty. Recent generative models enable the creation of…

Computer Vision and Pattern Recognition · Computer Science 2026-02-27 Huynh Trinh Ngoc , Toan Nguyen Hai , Ba Luong Son , Long Tran Quoc

Since their emergence, Convolutional Neural Networks (CNNs) have made significant strides in medical image analysis. However, the local nature of the convolution operator may pose a limitation for capturing global and long-range…

Image and Video Processing · Electrical Eng. & Systems 2024-04-01 Abdul Rehman Khan , Asifullah Khan

Objective : Abdominal anatomy segmentation is crucial for numerous applications from computer-assisted diagnosis to image-guided surgery. In this context, we address fully-automated multi-organ segmentation from abdominal CT and MR images…

Image and Video Processing · Electrical Eng. & Systems 2020-01-29 Pierre-Henri Conze , Ali Emre Kavur , Emilie Cornec-Le Gall , Naciye Sinem Gezer , Yannick Le Meur , M. Alper Selver , François Rousseau

Brain tumor segmentation is important for diagnosis of the tumor, and current deep-learning methods rely on a large set of annotated images for training, with high annotation costs. Unsupervised segmentation is promising to avoid human…

Computer Vision and Pattern Recognition · Computer Science 2025-01-28 Xiaochuan Ma , Jia Fu , Wenjun Liao , Shichuan Zhang , Guotai Wang

A major focus of clinical imaging workflow is disease diagnosis and management, leading to medical imaging datasets strongly tied to specific clinical objectives. This scenario has led to the prevailing practice of developing task-specific…

Computer Vision and Pattern Recognition · Computer Science 2024-04-09 Yunhe Gao , Zhuowei Li , Di Liu , Mu Zhou , Shaoting Zhang , Dimitris N. Metaxas

Medical images are often accompanied by metadata describing the image (vendor, acquisition parameters) and the patient (disease type or severity, demographics, genomics). This metadata is usually disregarded by image segmentation methods.…

Computer Vision and Pattern Recognition · Computer Science 2021-04-27 Andreanne Lemay , Charley Gros , Olivier Vincent , Yaou Liu , Joseph Paul Cohen , Julien Cohen-Adad

We develop a systematic theory of spectral decimation for quantum many-body Hamiltonians and show that it provides a quantitative probe of emergent symmetries in statistically mixed spectra. Building on an analytical description of…

Statistical Mechanics · Physics 2026-05-29 Feng He , Arthur Hutsalyuk , Giuseppe Mussardo , Andrea Stampiggi

Recent advancements in self-supervised learning have unlocked the potential to harness unlabeled data for auxiliary tasks, facilitating the learning of beneficial priors. This has been particularly advantageous in fields like medical image…

Computer Vision and Pattern Recognition · Computer Science 2024-04-30 Pranav Singh , Jacopo Cirrone

Cell segmentation in histopathological images is vital for diagnosis, and treatment of several diseases. Annotating data is tedious, and requires medical expertise, making it difficult to employ supervised learning. Instead, we study a…

Computer Vision and Pattern Recognition · Computer Science 2025-11-06 Aayush Kumar Tyagi , Vaibhav Mishra , Prathosh A. P. , Mausam

We introduce a method that takes advantage of high-quality pretrained multimodal representations to explore fine-grained semantic networks in the human brain. Previous studies have documented evidence of functional localization in the…

Artificial Intelligence · Computer Science 2023-06-07 Cory Efird , Alex Murphy , Joel Zylberberg , Alona Fyshe