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Large Language Models (LLMs) prompted to generate chain-of-thought (CoT) exhibit impressive reasoning capabilities. Recent attempts at prompt decomposition toward solving complex, multi-step reasoning problems depend on the ability of the…

Computation and Language · Computer Science 2024-02-28 Gurusha Juneja , Subhabrata Dutta , Soumen Chakrabarti , Sunny Manchanda , Tanmoy Chakraborty

Large language models (LLMs) often make reasoning errors when solving mathematical problems, and how to automatically detect and correct these errors has become an important research direction. However, existing approaches \textit{mainly…

Computation and Language · Computer Science 2025-11-19 Biaojie Zeng , Min Zhang , Juan Zhou , Fengrui Liu , Ruiyang Huang , Xin Lin

Large language models (LLMs) now exhibit strong multi-step reasoning abilities, but existing inference-time scaling methods remain computationally expensive, often relying on extensive sampling or external evaluators. We propose a…

Artificial Intelligence · Computer Science 2026-03-10 Nicolas Legrand , Kenneth Enevoldsen , Márton Kardos , Kristoffer Nielbo

The proliferation of Large Language Models (LLMs) in medicine has enabled impressive capabilities, yet a critical gap remains in their ability to perform systematic, transparent, and verifiable reasoning, a cornerstone of clinical practice.…

Computation and Language · Computer Science 2025-08-04 Wenxuan Wang , Zizhan Ma , Meidan Ding , Shiyi Zheng , Shengyuan Liu , Jie Liu , Jiaming Ji , Wenting Chen , Xiang Li , Linlin Shen , Yixuan Yuan

Mass spectrometry (MS) is a powerful analytical technique for identifying small molecules, yet determining complete molecular structures directly from tandem mass spectra (MS/MS) remains a long-standing challenge due to complex…

Computation and Language · Computer Science 2026-01-13 Yufeng Wang , Lu Wei , Lin Liu , Hao Xu , Haibin Ling

Drug discovery projects entail cycles of design, synthesis, and testing that yield a series of chemically related small molecules whose properties, such as binding affinity to a given target protein, are progressively tailored to a…

Machine Learning · Computer Science 2020-02-10 Paul Maragakis , Hunter Nisonoff , Brian Cole , David E. Shaw

Chain-of-Thought (CoT) prompting has shown promise in enhancing the reasoning capabilities of large language models (LLMs) by generating natural language (NL) rationales that lead to the final answer. However, it struggles with numerical…

Artificial Intelligence · Computer Science 2025-02-13 Cheryl Li , Tianyuan Xu , Yiwen Guo

Constrained decoding approaches aim to control the meaning or style of text generated by the pre-trained large language models (LLMs or also PLMs) for various tasks at inference time. However, these methods often guide plausible…

Computation and Language · Computer Science 2025-05-06 Chen Xu , Tian Lan , Yu Ji , Changlong Yu , Wei Wang , Jun Gao , Qunxi Dong , Kun Qian , Piji Li , Wei Bi , Bin Hu

Given the remarkable performance of Large Language Models (LLMs), an important question arises: Can LLMs conduct human-like scientific research and discover new knowledge, and act as an AI scientist? Scientific discovery is an iterative…

Machine Learning · Computer Science 2025-02-24 Tingting Chen , Srinivas Anumasa , Beibei Lin , Vedant Shah , Anirudh Goyal , Dianbo Liu

Recent large reasoning models (LRMs) driven by reinforcement learning algorithms (e.g., GRPO) have achieved remarkable performance on challenging reasoning tasks. However, these models suffer from overthinking, generating unnecessarily long…

Artificial Intelligence · Computer Science 2026-03-03 Gang Li , Yan Chen , Ming Lin , Tianbao Yang

Drug discovery frequently loses momentum when data, expertise, and tools are scattered, slowing design cycles. To shorten this loop we built a hierarchical, tool using agent framework that automates molecular optimisation. A Principal…

Machine Learning · Computer Science 2025-08-06 Atabey Ünlü , Phil Rohr , Ahmet Celebi

Molecular optimization is a fundamental goal in the chemical sciences and is of central interest to drug and material design. In recent years, significant progress has been made in solving challenging problems across various aspects of…

Computational Engineering, Finance, and Science · Computer Science 2022-10-11 Wenhao Gao , Tianfan Fu , Jimeng Sun , Connor W. Coley

Recent generations of language models have introduced Large Reasoning Models (LRMs) that generate detailed thinking processes before providing answers. While these models demonstrate improved performance on reasoning benchmarks, their…

Artificial Intelligence · Computer Science 2025-11-21 Parshin Shojaee , Iman Mirzadeh , Keivan Alizadeh , Maxwell Horton , Samy Bengio , Mehrdad Farajtabar

In the field of chemical engineering, traditional data-processing and prediction methods face significant challenges. Machine-learning and large-language models (LLMs) also have their respective limitations. This paper explores the…

Machine Learning · Computer Science 2025-02-19 Tianhang Zhou , Yingchun Niu , Xingying Lan , Chunming Xu

Machine learning (ML) holds great promise for clinical applications but is often hindered by limited access to high-quality data due to privacy concerns, high costs, and long timelines associated with clinical trials. While large language…

Computation and Language · Computer Science 2026-03-27 Zerui Xu , Fang Wu , Yingzhou Lu , Yuanyuan Zhang , Yue Zhao

Improving the multi-step reasoning ability of Large Language Models (LLMs) is a critical yet challenging task. The dominant paradigm, outcome-supervised reinforcement learning (RLVR), rewards only correct final answers, often propagating…

Artificial Intelligence · Computer Science 2025-10-14 Beining Wang , Weihang Su , Hongtao Tian , Tao Yang , Yujia Zhou , Ting Yao , Qingyao Ai , Yiqun Liu

This paper investigates the capabilities of large language models (LLMs) in formulating and solving decision-making problems using mathematical programming. We first conduct a systematic review and meta-analysis of recent literature to…

Artificial Intelligence · Computer Science 2025-08-26 Mohammad J. Abdel-Rahman , Yasmeen Alslman , Dania Refai , Amro Saleh , Malik A. Abu Loha , Mohammad Yahya Hamed

In this study, we introduced a new benchmark consisting of a curated dataset and a defined evaluation process to assess the compositional reasoning capabilities of large language models within the chemistry domain. We designed and validated…

Computation and Language · Computer Science 2025-08-07 Mohammad Khodadad , Ali Shiraee Kasmaee , Mahdi Astaraki , Nicholas Sherck , Hamidreza Mahyar , Soheila Samiee

The reasoning abilities are one of the most enigmatic and captivating aspects of large language models (LLMs). Numerous studies are dedicated to exploring and expanding the boundaries of this reasoning capability. However, tasks that embody…

Artificial Intelligence · Computer Science 2025-02-27 Yuze Zhao , Tianyun Ji , Wenjun Feng , Zhenya Huang , Qi Liu , Zhiding Liu , Yixiao Ma , Kai Zhang , Enhong Chen

Understanding how the human brain progresses from processing simple linguistic inputs to performing high-level reasoning is a fundamental challenge in neuroscience. While modern large language models (LLMs) are increasingly used to model…

Computation and Language · Computer Science 2026-01-27 Linyang He , Tianjun Zhong , Richard Antonello , Gavin Mischler , Micah Goldblum , Nima Mesgarani
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