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Molecule generation and optimization is a fundamental task in chemical domain. The rapid development of intelligent tools, especially large language models (LLMs) with powerful knowledge reserves and interactive capabilities, has provided…

Machine Learning · Computer Science 2026-02-10 Haoran Liu , Zheni Zeng , Yukun Yan , Yuxuan Chen , Yunduo Xiao

Large language models (LLMs) demonstrate remarkable reasoning capabilities in tasks such as algorithmic coding and mathematical problem-solving. Recent methods have improved reasoning through expanded corpus and multistage training…

Logical reasoning is a critical benchmark for evaluating the capabilities of large language models (LLMs), as it reflects their ability to derive valid conclusions from given premises. While the combination of test-time scaling with…

Computation and Language · Computer Science 2025-08-28 Ramya Keerthy Thatikonda , Wray Buntine , Ehsan Shareghi

Recent advances in large language models (LLMs) have revolutionized the landscape of reasoning tasks. To enhance the capabilities of LLMs to emulate human reasoning, prior studies have focused on modeling reasoning steps using various…

Artificial Intelligence · Computer Science 2024-05-28 Hongda Sun , Weikai Xu , Wei Liu , Jian Luan , Bin Wang , Shuo Shang , Ji-Rong Wen , Rui Yan

Molecular optimization is a central task in drug discovery that requires precise structural reasoning and domain knowledge. While large language models (LLMs) have shown promise in generating high-level editing intentions in natural…

Machine Learning · Computer Science 2025-10-17 Wenyu Zhu , Chengzhu Li , Xiaohe Tian , Yifan Wang , Yinjun Jia , Jianhui Wang , Bowen Gao , Ya-Qin Zhang , Wei-Ying Ma , Yanyan Lan

Large Language Models (LLMs) are increasingly deployed in critical applications requiring reliable reasoning, yet their internal reasoning processes remain difficult to evaluate systematically. Existing methods focus on final-answer…

Machine Learning · Computer Science 2026-02-03 Shaima Ahmad Freja , Ferhat Ozgur Catak , Betul Yurdem , Chunming Rong

Advancements in artificial intelligence for molecular science are necessitating a paradigm shift from purely data-driven predictions to knowledge-guided computational reasoning. Existing molecular models are predominantly proprietary,…

Machine Learning · Computer Science 2026-03-16 Pengfei Liu , Shuang Ge , Jun Tao , Zhixiang Ren

While large language models (LLMs) leverage both knowledge and reasoning during inference, the capacity to distinguish between them plays a pivotal role in model analysis, interpretability, and development. Inspired by dual-system cognitive…

Artificial Intelligence · Computer Science 2025-07-25 Mutian Yang , Jiandong Gao , Ji Wu

Predicting cancer treatment outcomes requires models that are both accurate and interpretable, particularly in the presence of heterogeneous clinical data. While large language models (LLMs) have shown strong performance in biomedical NLP,…

Computation and Language · Computer Science 2025-10-21 Raghu Vamshi Hemadri , Geetha Krishna Guruju , Kristi Topollai , Anna Ewa Choromanska

Large language models (LLMs) have demonstrated strong reasoning abilities across specialized domains, motivating research into their application to legal reasoning. However, existing legal benchmarks often conflate factual recall with…

Artificial Intelligence · Computer Science 2025-11-21 Wenhan Yu , Xinbo Lin , Lanxin Ni , Jinhua Cheng , Lei Sha

Recently, large language models (LLMs) have shown significant progress, approaching human perception levels. In this work, we demonstrate that despite these advances, LLMs still struggle to reason using molecular structural information.…

Machine Learning · Computer Science 2025-05-26 Yunhui Jang , Jaehyung Kim , Sungsoo Ahn

Large language models (LLMs) have shown impressive capabilities, but still struggle with complex reasoning tasks requiring multiple steps. While prompt-based methods like Chain-of-Thought (CoT) can improve LLM reasoning at inference time,…

Artificial Intelligence · Computer Science 2024-11-25 Haolin Chen , Yihao Feng , Zuxin Liu , Weiran Yao , Akshara Prabhakar , Shelby Heinecke , Ricky Ho , Phil Mui , Silvio Savarese , Caiming Xiong , Huan Wang

Large language models (LLMs), especially Explicit Long Chain-of-Thought (CoT) reasoning models like DeepSeek-R1 and QWQ, have demonstrated powerful reasoning capabilities, achieving impressive performance in commonsense reasoning and…

Computation and Language · Computer Science 2025-08-13 Jiatong Li , Weida Wang , Qinggang Zhang , Junxian Li , Di Zhang , Changmeng Zheng , Shufei Zhang , Xiaoyong Wei , Qing Li

Recent reasoning-based large language models have shown strong performance on tasks with verifiable outcomes, but their use in de novo molecular generation remains limited by the lack of training environments where rewards can be computed…

Machine Learning · Computer Science 2026-05-12 Philippe Formont , Maxime Darrin , Ismail Ben Ayed , Pablo Piantanida

Despite recent advances in the reasoning capabilities of Large Language Models (LLMs), improving the reasoning ability of Small Language Models (SLMs, e.g., up to 1.5B parameters) remains challenging. A key obstacle lies in the complexity…

Computation and Language · Computer Science 2025-12-16 Li Wang , Changhao Zhang , Zengqi Xiu , Kai Lu , Xin Yu , Kui Zhang , Wenjun Wu

Large Language Models (LLMs) have shown outstanding performance across wide range of downstream tasks. This competency is attributed to their substantial parameter size and pre-training on extensive corpus. Moreover, LLMs have exhibited…

Computation and Language · Computer Science 2023-08-10 Yuhan Ma , Haiqi Jiang , Chenyou Fan

Despite strong performance on existing benchmarks, it remains unclear whether large language models can reason over genuinely novel scientific information. Most evaluations score end-to-end RAG pipelines, where reasoning is confounded with…

Large Language Models (LLMs) have shown impressive capabilities in complex reasoning tasks. However, current approaches employ uniform language density for both intermediate reasoning and final answers, leading to computational…

Computation and Language · Computer Science 2025-12-18 Zhengyi Zhao , Shubo Zhang , Yuxi Zhang , Huimin Wang , Binyang Li , Kam-Fai Wong

Large language models (LLMs) benefit substantially from supervised fine-tuning (SFT) and reinforcement learning with verifiable rewards (RLVR) in reasoning tasks. However, these recipes perform poorly in instruction-based molecular…

Machine Learning · Computer Science 2026-03-09 Xuan Li , Zhanke Zhou , Zongze Li , Jiangchao Yao , Yu Rong , Lu Zhang , Bo Han
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