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We present a computational imaging mode for large scale electron microscopy data, which retrieves a complex wave from noisy/sparse intensity recordings using a deep learning approach and subsequently reconstructs an image of the specimen…

Materials Science · Physics 2022-02-28 Thomas Friedrich , Chu-Ping Yu , Johan Verbeek , Timothy Pennycook , Sandra Van Aert

We present a physically-motivated topology of a deep neural network that can efficiently infer extensive parameters (such as energy, entropy, or number of particles) of arbitrarily large systems, doing so with O(N) scaling. We use a form of…

Computational Physics · Physics 2019-04-18 Kyle Mills , Kevin Ryczko , Iryna Luchak , Adam Domurad , Chris Beeler , Isaac Tamblyn

We apply a temporal edge prediction model for weighted dynamic graphs to predict time-dependent changes in molecular structure. Each molecule is represented as a complete graph in which each atom is a vertex and all vertex pairs are…

Machine Learning · Computer Science 2021-06-28 Michael Hunter Ashby , Jenna A. Bilbrey

To solve high-dimensional parameter-dependent partial differential equations (pPDEs), a neural network architecture is presented. It is constructed to map parameters of the model data to corresponding finite element solutions. To improve…

Numerical Analysis · Mathematics 2024-03-20 Janina E. Schütte , Martin Eigel

Most chemical processes, such as distillation, absorption, extraction, and catalytic reactions, are extremely complex processes that are affected by multiple factors. The relationships between their input variables and output variables are…

Systems and Control · Electrical Eng. & Systems 2021-10-19 Li Sun , Fei Liang , Wutai Cui

Imaging-based early diagnosis of Alzheimer Disease (AD) has become an effective approach, especially by using nuclear medicine imaging techniques such as Positron Emission Topography (PET). In various literature it has been found that PET…

Machine Learning · Computer Science 2021-03-24 Jiaming Guo , Wei Qiu , Xiang Li , Xuandong Zhao , Ning Guo , Quanzheng Li

Cryo-electron tomography (cryo-ET) has emerged as a powerful tool for studying the structural heterogeneity of proteins and their complexes, offering insights into macromolecular dynamics directly within cells. Driven by recent…

Biomolecules · Quantitative Biology 2025-07-01 Jackson Carrion , Joseph H. Davis

Noninvasive X-ray imaging of nanoscale three-dimensional objects, e.g. integrated circuits (ICs), generally requires two types of scanning: ptychographic, which is translational and returns estimates of complex electromagnetic field through…

Image and Video Processing · Electrical Eng. & Systems 2024-08-15 Iksung Kang , Ziling Wu , Yi Jiang , Yudong Yao , Junjing Deng , Jeffrey Klug , Stefan Vogt , George Barbastathis

The robust approach for real-time analysis of the scanning transmission electron microscopy (STEM) data streams, based on the ensemble learning and iterative training (ELIT) of deep convolutional neural networks, is implemented on an…

Disordered Systems and Neural Networks · Physics 2022-07-27 Kevin M. Roccapriore , Matthew G. Boebinger , Ondrej Dyck , Ayana Ghosh , Raymond R. Unocic , Sergei V. Kalinin , Maxim Ziatdinov

Background: In recent years automated data analysis techniques have drawn great attention and are used in almost every field of research including biomedical. Artificial Neural Networks (ANNs) are one of the Computer- Aided- Diagnosis tools…

Neural and Evolutionary Computing · Computer Science 2012-11-08 M. Bazarghan , Y. Jaberi , R. Amandi , M. Abedi

Grain boundaries (GBs) are planar lattice defects that govern the properties of many types of polycrystalline materials. Hence, their structures have been investigated in great detail. However, much less is known about their chemical…

The calculation of electron density distribution using density functional theory (DFT) in materials and molecules is central to the study of their quantum and macro-scale properties, yet accurate and efficient calculation remains a…

Computational Physics · Physics 2024-05-15 Teddy Koker , Keegan Quigley , Eric Taw , Kevin Tibbetts , Lin Li

Physics-Informed Neural Networks (PINNs), which integrate deep learning with physical prior knowledge, have proven to be a powerful tool for studying the dynamics of high-dimensional nonlinear systems. The present work utilizes PINNs to…

Quantum Gases · Physics 2026-02-05 Dongshuai Liu , Boris A. Malomed , Wen Zhang

Despite the great progress made by deep CNNs in image semantic segmentation, they typically require a large number of densely-annotated images for training and are difficult to generalize to unseen object categories. Few-shot segmentation…

Computer Vision and Pattern Recognition · Computer Science 2020-02-10 Kaixin Wang , Jun Hao Liew , Yingtian Zou , Daquan Zhou , Jiashi Feng

Photoacoustic imaging is an emerging imaging modality that is based upon the photoacoustic effect. In photoacoustic tomography (PAT), the induced acoustic pressure waves are measured by an array of detectors and used to reconstruct an image…

Computer Vision and Pattern Recognition · Computer Science 2019-04-26 Steven Guan , Amir Khan , Siddhartha Sikdar , Parag V. Chitnis

Machine learning techniques have proven to be effective in addressing the structure of atomic nuclei. Physics$-$Informed Neural Networks (PINNs) are a promising machine learning technique suitable for solving integro-differential problems…

Computational Physics · Physics 2026-02-13 Lorenzo Brevi , Antonio Mandarino , Carlo Barbieri , Enrico Prati

Many clinical applications depend critically on the accurate differentiation and classification of different types of materials in patient anatomy. This work introduces a unified framework for accurate nonlinear material decomposition and…

Medical Physics · Physics 2018-03-19 Wei Zhao , Don Vernekohl , Fei Han , Bin Han , Hao Peng , Lei Xing , James K Min

The neuromorphic event cameras, which capture the optical changes of a scene, have drawn increasing attention due to their high speed and low power consumption. However, the event data are noisy, sparse, and nonuniform in the…

Computer Vision and Pattern Recognition · Computer Science 2021-03-23 Chang Liu , Xiaojuan Qi , Edmund Lam , Ngai Wong

The prediction of absorption, distribution, metabolism, excretion, and toxicity (ADMET) of small molecules from their molecular structure is a central problem in medicinal chemistry with great practical importance in drug discovery.…

Predicting the structure of multi-protein complexes is a grand challenge in biochemistry, with major implications for basic science and drug discovery. Computational structure prediction methods generally leverage pre-defined structural…

Biomolecules · Quantitative Biology 2021-01-26 Stephan Eismann , Raphael J. L. Townshend , Nathaniel Thomas , Milind Jagota , Bowen Jing , Ron O. Dror
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