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Summary: Mass spectrometry coupled to liquid chromatography (LC-MS/MS) is a powerful technique for the charac-terisation of proteomes. However, the diverse software platforms available for processing the raw proteomics data, each produce…

This paper presents a neurosymbolic framework for information extraction from documents, evaluated on transactional documents. We introduce a schema-based approach that integrates symbolic validation methods to enable more effective…

Computation and Language · Computer Science 2025-12-11 Arthur Hemmer , Mickaël Coustaty , Nicola Bartolo , Jean-Marc Ogier

This paper addresses the problem of generating table captions for scholarly documents, which often require additional information outside the table. To this end, we propose a method of retrieving relevant sentences from the paper body, and…

Computation and Language · Computer Science 2021-08-19 Junjie H. Xu , Kohei Shinden , Makoto P. Kato

Documents are often used for knowledge sharing and preservation in business and science, within which are tables that capture most of the critical data. Unfortunately, most documents are stored and distributed as PDF or scanned images,…

Computer Vision and Pattern Recognition · Computer Science 2020-12-03 Xinyi Zheng , Doug Burdick , Lucian Popa , Xu Zhong , Nancy Xin Ru Wang

While deep learning has achieved remarkable success across many domains, it has historically underperformed on tabular learning tasks, which remain dominated by gradient boosting decision trees. However, recent advancements are paving the…

Machine Learning · Computer Science 2025-10-31 Alan Arazi , Eilam Shapira , Roi Reichart

Evidence-based medicine, the practice in which healthcare professionals refer to the best available evidence when making decisions, forms the foundation of modern healthcare. However, it relies on labour-intensive systematic reviews, where…

Computation and Language · Computer Science 2021-12-13 Jetsun Whitton , Anthony Hunter

Tabular data are ubiquitous for the widespread applications of tables and hence have attracted the attention of researchers to extract underlying information. One of the critical problems in mining tabular data is how to understand their…

Machine Learning · Computer Science 2021-06-17 Lun Du , Fei Gao , Xu Chen , Ran Jia , Junshan Wang , Jiang Zhang , Shi Han , Dongmei Zhang

The rise of the programmable web offers new opportunities for the empirically driven social sciences. The access, compilation and preparation of data from the programmable web for statistical analysis can, however, involve substantial…

Computation · Statistics 2016-07-20 Ulrich Matter

In knowledge graph construction, a challenging issue is how to extract complex (e.g., overlapping) entities and relationships from a small amount of unstructured historical data. The traditional pipeline methods are to divide the extraction…

Computation and Language · Computer Science 2024-05-24 Jian Cheng , Tian Zhang , Shuang Zhang , Huimin Ren , Guo Yu , Xiliang Zhang , Shangce Gao , Lianbo Ma

Extracting information from tables in documents presents a significant challenge in many industries and in academic research. Existing methods which take a bottom-up approach of integrating lines into cells and rows or columns neglect the…

Neural and Evolutionary Computing · Computer Science 2019-04-04 Nataliya Le Vine , Matthew Zeigenfuse , Mark Rowan

The task of table structure recognition aims to recognize the internal structure of a table, which is a key step to make machines understand tables. Currently, there are lots of studies on this task for different file formats such as ASCII…

Information Retrieval · Computer Science 2019-08-29 Zewen Chi , Heyan Huang , Heng-Da Xu , Houjin Yu , Wanxuan Yin , Xian-Ling Mao

Table structure recognition is necessary for a comprehensive understanding of documents. Tables in unstructured business documents are tough to parse due to the high diversity of layouts, varying alignments of contents, and the presence of…

Computer Vision and Pattern Recognition · Computer Science 2021-11-16 Sachin Raja , Ajoy Mondal , C V Jawahar

Scientific literature contain important information related to cutting-edge innovations in diverse domains. Advances in natural language processing have been driving the fast development in automated information extraction from scientific…

Information Retrieval · Computer Science 2021-06-29 Antonio Jimeno Yepes , Xu Zhong , Douglas Burdick

With the development of data-centric AI, the focus has shifted from model-driven approaches to improving data quality. Academic literature, as one of the crucial types, is predominantly stored in PDF formats and needs to be parsed into…

Computation and Language · Computer Science 2025-02-04 Huawei Ji , Cheng Deng , Bo Xue , Zhouyang Jin , Jiaxin Ding , Xiaoying Gan , Luoyi Fu , Xinbing Wang , Chenghu Zhou

Automatic extraction of procedural graphs from documents creates a low-cost way for users to easily understand a complex procedure by skimming visual graphs. Despite the progress in recent studies, it remains unanswered: whether the…

Computation and Language · Computer Science 2024-08-09 Weihong Du , Wenrui Liao , Hongru Liang , Wenqiang Lei

Keyphrase extraction from documents is useful to a variety of applications such as information retrieval and document summarization. This paper presents an end-to-end method called DivGraphPointer for extracting a set of diversified…

Computation and Language · Computer Science 2019-05-21 Zhiqing Sun , Jian Tang , Pan Du , Zhi-Hong Deng , Jian-Yun Nie

Metadata extraction is essential for cataloging and preserving datasets, enabling effective research discovery and reproducibility, especially given the current exponential growth in scientific research. While Masader (Alyafeai et al.,2021)…

Computation and Language · Computer Science 2025-09-19 Zaid Alyafeai , Maged S. Al-Shaibani , Bernard Ghanem

Tabular data are omnipresent in various sectors of industries. Neural networks for tabular data such as TabNet have been proposed to make predictions while leveraging the attention mechanism for interpretability. However, the inferred…

Machine Learning · Computer Science 2024-06-12 Jacob Si , Wendy Yusi Cheng , Michael Cooper , Rahul G. Krishnan

Extracting information from academic PDF documents is crucial for numerous indexing, retrieval, and analysis use cases. Choosing the best tool to extract specific content elements is difficult because many, technically diverse tools are…

Information Retrieval · Computer Science 2023-03-20 Norman Meuschke , Apurva Jagdale , Timo Spinde , Jelena Mitrović , Bela Gipp

Tabular data analysis is crucial in various fields, and large language models show promise in this area. However, current research mostly focuses on rudimentary tasks like Text2SQL and TableQA, neglecting advanced analysis like forecasting…

Computation and Language · Computer Science 2023-12-22 Xinyi He , Mengyu Zhou , Xinrun Xu , Xiaojun Ma , Rui Ding , Lun Du , Yan Gao , Ran Jia , Xu Chen , Shi Han , Zejian Yuan , Dongmei Zhang
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