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The integration of large language models (LLMs) into scientific research is accelerating the realization of autonomous ``AI Scientists.'' While recent advancements have empowered AI to formulate hypotheses and design experiments, a critical…

Quantum Physics · Physics 2026-05-27 Masaki Shiraishi , Ikko Hamamura , Tatsuya Ishigaki , Tadashi Kadowaki

Large language model (LLM)-based AI agents extend LLM capabilities by enabling access to tools such as data sources, APIs, search engines, code sandboxes, and even other agents. While this empowers agents to perform complex tasks, LLMs may…

Software Engineering · Computer Science 2026-01-14 Aarya Doshi , Yining Hong , Congying Xu , Eunsuk Kang , Alexandros Kapravelos , Christian Kästner

Large Language Models (LLMs) have evolved into AI agents that interact with external tools and environments to perform complex tasks. The Model Context Protocol (MCP) has become the de facto standard for connecting agents with such…

Cryptography and Security · Computer Science 2026-04-27 Christoph Bühler , Matteo Biagiola , Luca Di Grazia , Guido Salvaneschi

The Model Context Protocol (MCP) has unified the interface between Large Language Models (LLMs) and external tools, yet a fundamental gap remains in how agents conceptualize the environments within which they operate. Current paradigms are…

Artificial Intelligence · Computer Science 2026-05-12 Giridhar Ganapavarapu , Dhaval Patel

The Model Context Protocol (MCP) introduces a standard specification that defines how Foundation Model (FM)-based agents should interact with external systems by invoking tools. However, to understand a tool's purpose and features, FMs rely…

Software Engineering · Computer Science 2026-02-24 Mohammed Mehedi Hasan , Hao Li , Gopi Krishnan Rajbahadur , Bram Adams , Ahmed E. Hassan

Large Language Model (LLM)-based agents have demonstrated remarkable capabilities in reasoning, planning, and tool usage. The recently proposed Model Context Protocol (MCP) has emerged as a unifying framework for integrating external tools…

Cryptography and Security · Computer Science 2025-12-03 Yuanhe Zhang , Weiliu Wang , Zhenhong Zhou , Kun Wang , Jie Zhang , Li Sun , Yang Liu , Sen Su

Healthcare AI systems have historically faced challenges in merging contextual reasoning, long-term state management, and human-verifiable workflows into a cohesive framework. This paper introduces a completely innovative architecture and…

Artificial Intelligence · Computer Science 2025-12-08 Zag ElSayed , Craig Erickson , Ernest Pedapati

Traditional threat modeling occurs during design, but cloud deployments introduce unanticipated threats, especially multi-stage attacks chaining vulnerabilities across trust boundaries. Existing security tools analyze components in…

Cryptography and Security · Computer Science 2026-03-25 Nicholas Pecka , Lotfi Ben Othmane , Bharat Bhargava , Renee Bryce

The proliferation of agentic AI coding assistants, including Claude Code, GitHub Copilot, Cursor, and emerging skill-based architectures, has fundamentally transformed software development workflows. These systems leverage Large Language…

Cryptography and Security · Computer Science 2026-01-27 Narek Maloyan , Dmitry Namiot

In this work, we study security of Model Context Protocol (MCP) agent toolchains and their applications in smart homes. We introduce AegisMCP, a protocol-level intrusion detector. Our contributions are: (i) a minimal attack suite spanning…

Cryptography and Security · Computer Science 2025-10-28 Zhonghao Zhan , Amir Al Sadi , Krinos Li , Hamed Haddadi

With the widespread availability of pretrained Large Language Models (LLMs) and their training datasets, concerns about the security risks associated with their usage has increased significantly. One of these security risks is the threat of…

Cryptography and Security · Computer Science 2025-06-10 Neil Fendley , Edward W. Staley , Joshua Carney , William Redman , Marie Chau , Nathan Drenkow

Machine learning (ML) underpins foundation models in finance, healthcare, and critical infrastructure, making them targets for data poisoning, model extraction, prompt injection, automated jailbreaking, and preference-guided black-box…

Cryptography and Security · Computer Science 2025-12-30 Armstrong Foundjem , Lionel Nganyewou Tidjon , Leuson Da Silva , Foutse Khomh

In recent years, blockchain has experienced widespread adoption across various industries, becoming integral to numerous enterprise applications. Concurrently, the rise of generative AI and LLMs has transformed human-computer interactions,…

Code Language Models (CLMs) have achieved tremendous progress in source code understanding and generation, leading to a significant increase in research interests focused on applying CLMs to real-world software engineering tasks in recent…

Cryptography and Security · Computer Science 2024-11-13 Yulong Yang , Haoran Fan , Chenhao Lin , Qian Li , Zhengyu Zhao , Chao Shen , Xiaohong Guan

The Model Context Protocol (MCP) is an open and standardized interface that enables large language models (LLMs) to interact with external tools and services, and is increasingly adopted by AI agents. However, the security of MCP-based…

Cryptography and Security · Computer Science 2026-03-10 Yuhang Huang , Boyang Ma , Biwei Yan , Xuelong Dai , Yechao Zhang , Minghui Xu , Kaidi Xu , Yue Zhang

While fine-tuning services drive the rapid expansion of task capabilities in large language models (LLMs), they are often accompanied by the degradation and reorganization of safety-aligned representations, making models more prone to…

Machine Learning · Computer Science 2026-02-02 Bing Han , Feifei Zhao , Dongcheng Zhao , Guobin Shen , Ping Wu , Yu Shi , Yi Zeng

Multi-agent systems represent a significant advancement in artificial intelligence, enabling complex problem-solving through coordinated specialized agents. However, these systems face fundamental challenges in context management,…

Multiagent Systems · Computer Science 2025-05-01 Naveen Krishnan

Model Context Protocol (MCP) enables agents to interact with external tools, yet empirical research on MCP is hindered by the lack of large-scale, accessible datasets. We present MCPZoo, the largest and most comprehensive dataset of MCP…

Cryptography and Security · Computer Science 2025-12-29 Mengying Wu , Pei Chen , Geng Hong , Baichao An , Jinsong Chen , Binwang Wan , Xudong Pan , Jiarun Dai , Min Yang

The Model Context Protocol (MCP) is emerging as a standard interface through which LLM agents invoke external tools, and a growing ecosystem of MCP servers now mediates access to vendor services. Most of these servers target vendors that…

Software Engineering · Computer Science 2026-04-08 Meriem Mastouri , Emna Ksontini , Amine Barrak , Wael Kessentini

Malware presents a persistent threat to user privacy and data integrity. To combat this, machine learning-based (ML-based) malware detection (MD) systems have been developed. However, these systems have increasingly been attacked in recent…

Cryptography and Security · Computer Science 2025-05-19 Ping He , Yuhao Mao , Changjiang Li , Lorenzo Cavallaro , Ting Wang , Shouling Ji
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