Related papers: Tangle structure trees II: trees of tangles and ta…
Tanglegrams are special graphs that consist of a pair of rooted binary trees with the same number of leaves, and a perfect matching between the two leaf-sets. These objects are of use in phylogenetics and are represented with straightline…
The top tree data structure is an important and fundamental tool in dynamic graph algorithms. Top trees have existed for decades, and today serve as an ingredient in many state-of-the-art algorithms for dynamic graphs. In this work, we give…
We give a descriptive construction of trees for multi-ended graphs, which yields yet another proof of Stallings' theorem on ends of groups. Even though our proof is, in principle, not very different from already existing proofs and it draws…
Let $T$ be a tree, we show that the null space of the adjacency matrix of $T$ has relevant information about the structure of $T$. We introduce the Null Decomposition of trees, and use it in order to get formulas for independence number and…
We construct tree-decompositions of graphs that distinguish all their k-blocks and tangles of order k, for any fixed integer k. We describe a family of algorithms to construct such decompositions, seeking to maximize their diversity subject…
In this paper, we present a complete characterization of mutual-visibility sets in trees. It is shown that a subset $S$ is a mutual-visibility set of a tree $T$ if and only if it coincides with the set of leaves of the Steiner subtree…
This paper is a short introduction to the theory of tangles, both in graphs and general connectivity systems. An emphasis is put on the correspondence between tangles of order k and k-connected components. In particular, we prove that there…
We introduce forest diagrams and strand diagrams for elements of Thompson's group F. A forest diagram is a pair of infinite, bounded binary forests together with an order-preserving bijection of the leaves. Using forest diagrams, we derive…
We generalise various theorems for finding indiscernible trees and arrays to positive logic: based on an existing modelling theorem for s-trees, we prove modelling theorems for str-trees, str$_0$-trees (the reduct of str-trees that forgets…
We find a duality between two well-known trees, the Calkin-Wilf tree and the Stern-Brocot tree, derived from cluster algebra theory. The vertex sets of these trees are the set of rational numbers, and they have cluster structures induced by…
A caterpillar tree is a connected, acyclic, graph in which all vertices are either a member of a central path, or joined to that central path by a single edge. In other words, caterpillar trees are the class of trees which become path…
In a series of four papers we determine structures whose existence is dual, in the sense of complementary, to the existence of stars or combs. Here, in the second paper of the series, we present duality theorems for combinations of stars…
There are hierarchical characteristics in the network and how to effectively reveal the hierarchical characteristics in the network is a problem in the research of network structure. If a node is assigned to the community to which it…
Tanglegrams are drawings of two rooted binary phylogenetic trees and a matching between their leaf sets. The trees are drawn crossing-free on opposite sides with their leaf sets facing each other on two vertical lines. Instead of minimizing…
Much information about a graph can be obtained by studying its spanning trees. On the other hand, a graph can be regarded as a 1-dimensional cell complex, raising the question of developing a theory of trees in higher dimension. As observed…
A tanglegram is a pair of binary trees with the same set of leaves. Unlabeled tanglegrams were counted recently by Billey, Konvalinka, and Matsen, who also proposed the problem of counting several variations of unlabeled tanglegrams…
In this paper, we investigate the problem of generating the spanning trees of a graph $G$ up to the automorphisms or "symmetries" of $G$. After introducing and surveying this problem for general input graphs, we present algorithms that…
Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…
We show that a graph $G$ has a normal spanning tree if and only if its vertex set is the union of countably many sets each separated from any subdivided infinite clique in $G$ by a finite set of vertices. This proves a conjecture by Brochet…
A brief review of the status of duality symmetries in string theory is presented. The evidence is accumulating rapidly that an enormous group of duality symmetries, including perturbative T dualities and non-perturbative S-dualities,…