Related papers: The Inverse Lyndon Array: Definition, Properties, …

We present an algorithm for computing the Lyndon factorization of a string that is given in grammar compressed form, namely, a Straight Line Program (SLP). The algorithm runs in $O(n^4 + mn^3h)$ time and $O(n^2)$ space, where $m$ is the…

The dictionary learning problem concerns the task of representing data as sparse linear sums drawn from a smaller collection of basic building blocks. In application domains where such techniques are deployed, we frequently encounter…

Given a string $S$ of $n$ symbols, a longest common extension query $\mathsf{LCE}(i,j)$ asks for the length of the longest common prefix of the $i$th and $j$th suffixes of $S$. LCE queries have several important applications in string…

We consider a sliding window $W$ over a stream of characters from some alphabet of constant size. The user wants to perform deterministic substring matching on the current sliding window content and obtain positions of the matches. We…

Following the recent success of word embeddings, it has been argued that there is no such thing as an ideal representation for words, as different models tend to capture divergent and often mutually incompatible aspects like…

A correlation is a binary vector that encodes all possible positions of overlaps of two words, where an overlap for an ordered pair of words (u,v) occurs if a suffix of word u matches a prefix of word v. As multiple pairs can have the same…

Given a text $T$ of length $n$, we propose a deterministic online algorithm computing the sparse suffix array and the sparse longest common prefix array of $T$ in $O(c \sqrt{\lg n} + m \lg m \lg n \lg^* n)$ time with $O(m)$ words of space…

Given a set of $k$ strings $I$, their longest common subsequence (LCS) is the string with the maximum length that is a subset of all the strings in $I$. A data-structure for this problem preprocesses $I$ into a data-structure such that the…

Document listing on string collections is the task of finding all documents where a pattern appears. It is regarded as the most fundamental document retrieval problem, and is useful in various applications. Many of the fastest-growing…

The suffix array and the suffix tree are the two most fundamental data structures for string processing. For a length-$n$ text, however, they use $\Theta(n \log n)$ bits of space, which is often too costly. To address this, Grossi and…

We study the asymptotics and fine-scale behavior of quantitative combinatorial measures of infinite words and related dynamical and algebraic structures. We construct infinite recurrent words $w$ whose complexity functions $p_w(n)$ are…

In 1999 Lyngs{\o} and Pedersen proposed a conjecture stating that every binary circular word of length $n$ with equal number of zeros and ones has an antipalindromic linear subsequence of length at least $\frac{2}{3}n$. No progress over a…

Suppose we want to seek the longest common subsequences (LCSs) of two strings as informative patterns that explain the relationship between the strings. The dynamic programming algorithm gives us a table from which all LCSs can be extracted…

A foundational result in the theory of Lyndon words (words that are strictly earlier in lexicographic order than their cyclic permutations) is the Chen-Fox-Lyndon theorem which states that every word has a unique non-increasing…

In the Shortest-Superstring problem, we are given a set of strings S and want to find a string that contains all strings in S as substrings and has minimum length. This is a classical problem in approximation and the best known…

Let S be a finite, ordered alphabet, and let x = x_1 x_2 ... x_n be a string over S. A "secondary index" for x answers alphabet range queries of the form: Given a range [a_l,a_r] over S, return the set I_{[a_l;a_r]} = {i |x_i \in [a_l;…

In this paper we give a detailed analysis of deterministic and randomized algorithms that enumerate any number of irreducible polynomials of degree $n$ over a finite field and their roots in the extension field in quasilinear where $N=n^2$…

We consider the problem of encoding a string of length $n$ from an integer alphabet of size $\sigma$ so that access and substring equality queries (that is, determining the equality of any two substrings) can be answered efficiently. Any…

We propose a B tree representation storing $n$ keys, each of $k$ bits, in either (a) $nk + O(nk / \lg n)$ bits or (b) $nk + O(nk \lg \lg n/ \lg n)$ bits of space supporting all B tree operations in either (a) $O(\lg n )$ time or (b) $O(\lg…

We give a new characterization of maximal repetitions (or runs) in strings based on Lyndon words. The characterization leads to a proof of what was known as the "runs" conjecture (Kolpakov \& Kucherov (FOCS '99)), which states that the…