Related papers: The Inverse Lyndon Array: Definition, Properties, …
The suffix tree is a very important data structure in string processing, but it suffers from a huge space consumption. In large-scale applications, compressed suffix trees (CSTs) are therefore used instead. A CST consists of three…
A run in a string is a maximal periodic substring. For example, the string $\texttt{bananatree}$ contains the runs $\texttt{anana} = (\texttt{an})^{3/2}$ and $\texttt{ee} = \texttt{e}^2$. There are less than $n$ runs in any length-$n$…
The observed frequency of the longest proper prefix, the longest proper suffix, and the longest infix of a word $w$ in a given sequence $x$ can be used for classifying $w$ as avoided or overabundant. The definitions used for the expectation…
An absent word of a word y of length n is a word that does not occur in y. It is a minimal absent word if all its proper factors occur in y. Minimal absent words have been computed in genomes of organisms from all domains of life; their…
Suffix arrays and LCP arrays are one of the most fundamental data structures widely used for various kinds of string processing. We consider two problems for a read-only string of length $N$ over an integer alphabet $[1, \dots, \sigma]$ for…
The notion of inverse Lyndon word is related to the classical notion of Lyndon word. More precisely, inverse Lyndon words are all and only the nonempty prefixes of the powers of the anti-Lyndon words, where an anti-Lyndon word with respect…
We present the first worst-case linear time algorithm that directly computes the parameterized suffix and LCP arrays for constant sized alphabets. Previous algorithms either required quadratic time or the parameterized suffix tree to be…
The work takes another look at the number of runs that a string might contain and provides an alternative proof for the bound. We also propose another stronger conjecture that states that, for a fixed order on the alphabet, within every…
Sparse suffix sorting is the problem of sorting $b=o(n)$ suffixes of a string of length $n$. Efficient sparse suffix sorting algorithms have existed for more than a decade. Despite the multitude of works and their justified claims for…
In this note, we establish the convexity and monotonicity for affine standard Lyndon words in all types, generalizing the $A$-type results of arXiv:2305.16299. We also derive partial results on the structure of imaginary standard Lyndon…
The Suffix Array is a classic text index enabling on-line pattern matching queries via simple binary search. The main drawback of the Suffix Array is that it takes linear space in the text's length, even if the text itself is extremely…
This paper describes an alternative method of generating fixed points of certain substitution systems. This method centres on taking infinite words consisting of one repeated letter per word. These infinite words are then interlaced to form…
We evaluate the influence of different alphabet orderings on the Lyndon factorization of a string. Experiments with Pizza & Chili datasets show that for most alphabet reorderings, the number of Lyndon factors is usually small, and the…
$V$-order is a global order on strings related to Unique Maximal Factorization Families (UMFFs), which are themselves generalizations of Lyndon words. $V$-order has recently been proposed as an alternative to lexicographical order in the…
The focus of this thesis is the study and construction of covering arrays, relying on maximal period sequences and other tools from finite fields. A covering array of strength $t$, denoted $\mathrm{CA}(N; t, k,v)$, is an $N\times k$ array…
The Chen-Fox-Lyndon theorem states that every finite word over a fixed alphabet can be uniquely factorized as a lexicographically nonincreasing sequence of Lyndon words. This theorem can be used to define the family of Lyndon words in a…
The suffix array is a data structure that finds numerous applications in string processing problems for both linguistic texts and biological data. It has been introduced as a memory efficient alternative for suffix trees. The suffix array…
The suffix trees are fundamental data structures for various kinds of string processing. The suffix tree of a string $T$ of length $n$ has $O(n)$ nodes and edges, and the string label of each edge is encoded by a pair of positions in $T$.…
We present several results about position heaps, a relatively new alternative to suffix trees and suffix arrays. First, we show that, if we limit the maximum length of patterns to be sought, then we can also limit the height of the heap and…
A longest common extension (LCE) query on a string computes the length of the longest common suffix or prefix at two given positions. A dynamic LCE algorithm maintains a data structure that allows efficient LCE queries on a string that can…