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Related papers: SCALE:Scalable Conditional Atlas-Level Endpoint tr…

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This paper proposes Meta-SAGE, a novel approach for improving the scalability of deep reinforcement learning models for combinatorial optimization (CO) tasks. Our method adapts pre-trained models to larger-scale problems in test time by…

Machine Learning · Computer Science 2023-06-08 Jiwoo Son , Minsu Kim , Hyeonah Kim , Jinkyoo Park

In cell line perturbation experiments, a collection of cells is perturbed with external agents (e.g. drugs) and responses such as protein expression measured. Due to cost constraints, only a small fraction of all possible perturbations can…

Applications · Statistics 2022-07-21 James P. Long , Yumeng Yang , Kim-Anh Do

Supercomputers worldwide provide the necessary infrastructure for groundbreaking research. However, most supercomputers are not designed equally due to different desired figure of merit, which is derived from the computational bounds of the…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-09-07 Re'em Harel , Matan Rusanovsky , Ron Wagner , Harel Levin , Gal Oren

Optimal engine operation during a transient driving cycle is the key to achieving greater fuel economy, engine efficiency, and reduced emissions. In order to achieve continuously optimal engine operation, engine calibration methods use a…

Machine Learning · Computer Science 2019-09-24 Shashi M. Aithal , Prasanna Balaprakash

World models play a crucial role in decision-making within embodied environments, enabling cost-free explorations that would otherwise be expensive in the real world. To facilitate effective decision-making, world models must be equipped…

Modeling cellular responses to genetic and chemical perturbations remains a central challenge in single-cell biology. Existing data-driven frameworks have advanced perturbation prediction through variational autoencoders, chemically…

Machine Learning · Computer Science 2026-01-26 Francis Boabang , Samuel Asante Gyamerah

We address the challenge of performing Targeted Maximum Likelihood Estimation (TMLE) after an initial Highly Adaptive Lasso (HAL) fit. Existing approaches that utilize the data-adaptive working model selected by HAL-such as the relaxed HAL…

Methodology · Statistics 2025-06-23 Yi Li , Sky Qiu , Zeyi Wang , Mark van der Laan

We present a new experimental-computational technology of inferring network models that predict the response of cells to perturbations and that may be useful in the design of combinatorial therapy against cancer. The experiments are…

Single-cell perturbation prediction aims to infer how cells respond to unseen interventions and to achieve out-of-distribution (OOD) generalization, providing a computational route to understanding how perturbations reshape cellular…

Machine Learning · Computer Science 2026-05-26 Wenkang Jiang , Yuhang Liu , Erdun Gao , Ehsan Abbasnejad , Lina Yao , Javen Qinfeng Shi

Virtual cell modeling predicts molecular state changes under genetic perturbations in silico, which is essential for biological mechanism studies. However, existing approaches suffer from unconstrained reasoning, uninterpretable…

Quantitative Methods · Quantitative Biology 2026-04-23 Zhenyu Wang , Geyan Ye , Wei Liu , Man Tat Alexander Ng

This study presents a spatiotemporal traffic prediction approach for NextG mobile networks, ensuring the service-level agreements (SLAs) of each network slice. Our approach is multivariate, multi-step, and spatiotemporal. Leveraging 20…

Networking and Internet Architecture · Computer Science 2023-09-08 Evren Tuna , Alkan Soysal

Deploying Large Language Models (LLMs) on resource-constrained edge devices faces critical bottlenecks in memory bandwidth and power consumption. While ternary quantization (e.g., BitNet b1.58) significantly reduces model size, its direct…

Hardware Architecture · Computer Science 2026-05-05 Zi-Wei Lin , Tian-Sheuan Chang

Predicting cellular responses to genetic perturbations represents a fundamental challenge in systems biology, critical for advancing therapeutic discovery and virtual cell modeling. While large language models (LLMs) show promise for…

Urban bus transit agencies need reliable, network-wide delay predictions to provide accurate arrival information to passengers and support real-time operational control. Accurate predictions help passengers plan their trips, reduce waiting…

Machine Learning · Computer Science 2026-01-27 Emna Boudabbous , Mohamed Karaa , Lokman Sboui , Julio Montecinos , Omar Alam

Large, pretrained models are commonly finetuned with imagery that is heavily augmented to mimic different conditions and scales, with the resulting models used for various tasks with imagery from a range of spatial scales. Such models…

Computer Vision and Pattern Recognition · Computer Science 2023-09-25 Colorado J. Reed , Ritwik Gupta , Shufan Li , Sarah Brockman , Christopher Funk , Brian Clipp , Kurt Keutzer , Salvatore Candido , Matt Uyttendaele , Trevor Darrell

Phenotype-based screening has attracted much attention for identifying cell-active compounds. Transcriptional and proteomic profiles of cell population or single cells are informative phenotypic measures of cellular responses to…

Quantitative Methods · Quantitative Biology 2023-11-20 Wei Huang , Aichun Zhu , Hui Liu

Spatiotemporal learning is challenging due to the intricate interplay between spatial and temporal dependencies, the high dimensionality of the data, and scalability constraints. These challenges are further amplified in scientific domains,…

Machine Learning · Computer Science 2025-04-17 David Keetae Park , Xihaier Luo , Guang Zhao , Seungjun Lee , Miruna Oprescu , Shinjae Yoo

When trained on large-scale object classification datasets, certain artificial neural network models begin to approximate core object recognition behaviors and neural response patterns in the primate brain. While recent machine learning…

Machine Learning · Computer Science 2025-11-07 Abdulkadir Gokce , Martin Schrimpf

Throughout computational science, there is a growing need to utilize the continual improvements in raw computational horsepower to achieve greater physical fidelity through scale-bridging over brute-force increases in the number of mesh…

Large-scale distributed training of Deep Neural Networks (DNNs) on state-of-the-art platforms is expected to be severely communication constrained. To overcome this limitation, numerous gradient compression techniques have been proposed and…