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Due to its longevity and enormous information density, DNA is an attractive medium for archival storage. In this work, we study the fundamental limits and tradeoffs of DNA-based storage systems under a simple model, motivated by current…

Information Theory · Computer Science 2017-05-16 Reinhard Heckel , Ilan Shomorony , Kannan Ramchandran , David N. C. Tse

We analyze the information-theoretic limits for the recovery of node labels in several network models. This includes the Stochastic Block Model, the Exponential Random Graph Model, the Latent Space Model, the Directed Preferential…

Machine Learning · Computer Science 2019-05-28 Chuyang Ke , Jean Honorio

Erasure codes are being increasingly used in distributed-storage systems in place of data-replication, since they provide the same level of reliability with much lower storage overhead. We consider the problem of constructing explicit…

Information Theory · Computer Science 2015-09-08 Preetum Nakkiran , K. V. Rashmi , Kannan Ramchandran

We introduce the class of partition-balanced families of codes, and show how to exploit their combinatorial invariants to obtain upper and lower bounds on the number of codes that have a prescribed property. In particular, we derive precise…

Information Theory · Computer Science 2018-12-13 Eimear Byrne , Alberto Ravagnani

Maximum distance separable (MDS) codes are widely used in storage systems to protect against disk (node) failures. A node is said to have capacity $l$ over some field $\mathbb{F}$, if it can store that amount of symbols of the field. An…

Information Theory · Computer Science 2016-11-17 Itzhak Tamo , Zhiying Wang , Jehoshua Bruck

We study the theoretical problem of synthesizing multiple DNA strands under spatial constraints, motivated by large-scale DNA synthesis technologies. In this setting, strands are arranged in an array and synthesized according to a fixed…

Information Theory · Computer Science 2026-01-14 Boaz Moav , Ryan Gabrys , Eitan Yaakobi

We study the problem of community recovery and detection in multi-layer stochastic block models, focusing on the critical network density threshold for consistent community structure inference. Using a prototypical two-block model, we…

Statistics Theory · Mathematics 2023-11-15 Jing Lei , Anru R. Zhang , Zihan Zhu

An erasure code is said to be a code with sequential recovery with parameters $r$ and $t$, if for any $s \leq t$ erased code symbols, there is an $s$-step recovery process in which at each step we recover exactly one erased code symbol by…

Information Theory · Computer Science 2018-01-23 Balaji Srinivasan Babu , Ganesh R. Kini , P. Vijay Kumar

DNA sequences are prone to creating secondary structures by folding back on themselves by non-specific hybridization among its nucleotides. The formation of secondary structures makes the sequences chemically inactive towards synthesis and…

Information Theory · Computer Science 2022-11-30 Siddhartha Siddhiprada Bhoi , Paramapalli Udaya , Abhay Kumar Singh

Maximum distance separable (MDS) codes facilitate the achievement of elevated levels of fault tolerance in storage systems while incurring minimal redundancy overhead. Reed-Solomon (RS) codes are typical MDS codes with the sub-packetization…

Information Theory · Computer Science 2024-05-07 Hao Shi , Zhengyi Jiang , Zhongyi Huang , Bo Bai , Gong Zhang , Hanxu Hou

We consider the problem of designing codes for distributed storage that protect user data against eavesdroppers that can gain access to network links as well as individual nodes. Our goal is to achieve weak security (also known as block…

Information Theory · Computer Science 2017-10-19 Swanand Kadhe , Alex Sprintson

In this paper, we employ fixed point theory and semidefinite programming to compute the performance bounds on convex block-sparsity recovery algorithms. As a prerequisite for optimal sensing matrix design, a computable performance bound…

Information Theory · Computer Science 2011-10-06 Gongguo Tang , Arye Nehorai

Dense retrieval, which encodes queries and documents into a single dense vector, has become the dominant neural retrieval approach due to its simplicity and compatibility with fast approximate nearest neighbor algorithms. As the tasks dense…

Information Retrieval · Computer Science 2026-02-06 Julian Killingback , Mahta Rafiee , Madine Manas , Hamed Zamani

In this paper, we study error-correcting codes for the storage of data in synthetic deoxyribonucleic acid (DNA). We investigate a storage model where data is represented by an unordered set of $M$ sequences, each of length $L$. Errors…

Information Theory · Computer Science 2018-05-10 Andreas Lenz , Paul H. Siegel , Antonia Wachter-Zeh , Eitan Yaakobi

Understanding the limits of list-decoding and list-recovery of Reed-Solomon (RS) codes is of prime interest in coding theory and has attracted a lot of attention in recent decades. However, the best possible parameters for these problems…

Information Theory · Computer Science 2021-06-01 Eitan Goldberg , Chong Shangguan , Itzhak Tamo

Private information retrieval scheme for coded data storage is considered in this paper. We focus on the case where the size of each data record is large and hence only the download cost (but not the upload cost for transmitting retrieval…

Information Theory · Computer Science 2016-11-15 Terence H. Chan , Siu-Wai Ho , Hirosuke Yamamoto

The high repair cost of (n,k) Maximum Distance Separable (MDS) erasure codes has recently motivated a new class of codes, called Regenerating Codes, that optimally trade off storage cost for repair bandwidth. On one end of this spectrum of…

Information Theory · Computer Science 2010-04-19 Changho Suh , Kannan Ramchandran

We consider the problem of private information retrieval (PIR) over a distributed storage system. The storage system consists of $N$ non-colluding databases, each storing a coded version of $M$ messages. In the PIR problem, the user wishes…

Information Theory · Computer Science 2016-09-27 Karim Banawan , Sennur Ulukus

In this paper, we introduce a model of a distributed storage system that is locally recoverable from any single server failure. Unlike the usual local recovery model of codes for distributed storage, this model accounts for the fact that…

Information Theory · Computer Science 2020-07-01 Arya Mazumdar

Insertion-deletion codes (insdel codes for short) are used for correcting synchronization errors in communications, and in other many interesting fields such as DNA storage, date analysis, race-track memory error correction and language…

Information Theory · Computer Science 2022-06-02 Qinqin Ji , Dabin Zheng , Hao Chen , Xiaoqiang Wang
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