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Structure optimization, which yields the relaxed structure (minimum-energy state), is essential for reliable materials property calculations, yet traditional ab initio approaches such as density-functional theory (DFT) are computationally…

Materials Science · Physics 2025-11-18 Ziduo Yang , Yi-Ming Zhao , Xian Wang , Wei Zhuo , Xiaoqing Liu , Lei Shen

Predictive machine learning models generally excel on in-distribution data, but their performance degrades on out-of-distribution (OOD) inputs. Reliable deployment therefore requires robust OOD detection, yet this is particularly…

Machine Learning · Computer Science 2026-02-19 David Graber , Victor Armegioiu , Rebecca Buller , Siddhartha Mishra

We propose a novel point cloud based 3D organ segmentation pipeline utilizing deep Q-learning. In order to preserve shape properties, the learning process is guided using a statistical shape model. The trained agent directly predicts…

Computer Vision and Pattern Recognition · Computer Science 2018-06-18 Xia Zhong , Mario Amrehn , Nishant Ravikumar , Shuqing Chen , Norbert Strobel , Annette Birkhold , Markus Kowarschik , Rebecca Fahrig , Andreas Maier

In graph signal processing, data samples are associated to vertices on a graph, while edge weights represent similarities between those samples. We propose a convex optimization problem to learn sparse well connected graphs from data. We…

Signal Processing · Electrical Eng. & Systems 2020-04-21 Eduardo Pavez , Antonio Ortega

Recently developed deep neural models like NetGAN, CELL, and Variational Graph Autoencoders have made progress but face limitations in replicating key graph statistics on generating large graphs. Diffusion-based methods have emerged as…

Machine Learning · Computer Science 2023-10-31 Mingyang Wu , Xiaohui Chen , Li-Ping Liu

We demonstrate a mechanism for the production of massive excitations in graphs. We treat the number of neighbors at each vertex in the graph (degree) as a scalar field. Then we introduce a mechanism inspired by the Higgs mechanism in…

Disordered Systems and Neural Networks · Physics 2026-04-08 Ioannis Kleftogiannis , Ilias Amanatidis

We propose a deep autoencoder with graph topology inference and filtering to achieve compact representations of unorganized 3D point clouds in an unsupervised manner. Many previous works discretize 3D points to voxels and then use…

Computer Vision and Pattern Recognition · Computer Science 2020-02-19 Siheng Chen , Chaojing Duan , Yaoqing Yang , Duanshun Li , Chen Feng , Dong Tian

Obtaining sparse, interpretable representations of observable data is crucial in many machine learning and signal processing tasks. For data representing flows along the edges of a graph, an intuitively interpretable way to obtain such…

Social and Information Networks · Computer Science 2023-11-03 Josef Hoppe , Michael T. Schaub

We study the problem of approximating a discrete probability distribution, such as the next-token distribution of a large language model, by a dyadic distribution induced by a binary tree under encoding rate constraints. The objective is to…

Information Theory · Computer Science 2026-05-08 Daniella Bar-Lev , Farzad Farnoud , Ryan Gabrys

Disentangled representation learning has recently attracted a significant amount of attention, particularly in the field of image representation learning. However, learning the disentangled representations behind a graph remains largely…

Machine Learning · Computer Science 2020-06-11 Xiaojie Guo , Liang Zhao , Zhao Qin , Lingfei Wu , Amarda Shehu , Yanfang Ye

A common starting point for drug design is to find small chemical groups or "fragments" that form interactions with distinct subregions in a protein binding pocket. The subsequent challenge is to assemble these fragments into a molecule…

Quantitative Methods · Quantitative Biology 2025-05-29 Rohan V. Koodli , Alexander S. Powers , Ayush Pandit , Chiho Im , Ron O. Dror

Combining tree decomposition and transfer matrix techniques provides a very general algorithm for computing exact partition functions of statistical models defined on arbitrary graphs. The algorithm is particularly efficient in the case of…

Mathematical Physics · Physics 2015-05-18 Andrea Bedini , Jesper Lykke Jacobsen

The simulation of the physical movement of multi-body systems at an atomistic level, with forces calculated from a quantum mechanical description of the electrons, motivates a graph partitioning problem studied in this article. Several…

3D human segmentation has seen noticeable progress in re-cent years. It, however, still remains a challenge to date. In this paper, weintroduce a deep patch-based method for 3D human segmentation. Wefirst extract a local surface patch for…

Computer Vision and Pattern Recognition · Computer Science 2020-07-14 Dongbo Zhang , Zheng Fang , Xuequan Lu , Hong Qin , Antonio Robles-Kelly , Chao Zhang , Ying He

The influence of edge roughness in angle resolved scatterometry at periodically structured surfaces is investigated. A good description of the radiation interaction with structured surfaces is crucial for the understanding of optical…

Optics · Physics 2012-09-11 A. Kato , S. Burger , F. Scholze

We propose a combination of a variational autoencoder and a transformer based model which fully utilises graph convolutional and graph pooling layers to operate directly on graphs. The transformer model implements a novel node encoding…

Machine Learning · Computer Science 2021-04-12 Joshua Mitton , Hans M. Senn , Klaas Wynne , Roderick Murray-Smith

There has been an increased interest in applying machine learning techniques on relational structured-data based on an observed graph. Often, this graph is not fully representative of the true relationship amongst nodes. In these settings,…

Machine Learning · Statistics 2022-08-05 Florence Regol , Soumyasundar Pal , Jianing Sun , Yingxue Zhang , Yanhui Geng , Mark Coates

Medical image segmentation is one of the important tasks of computer-aided diagnosis in medical image analysis. Since most medical images have the characteristics of blurred boundaries and uneven intensity distribution, through existing…

Computer Vision and Pattern Recognition · Computer Science 2021-06-09 Sixing Yin , Yameng Han , Shufang Li

We study set systems formed by neighborhoods in graphs of bounded twin-width. We start by proving that such graphs have linear neighborhood complexity, in analogy to previous results concerning graphs from classes with bounded expansion and…

Logic in Computer Science · Computer Science 2023-04-27 Wojciech Przybyszewski

Motivated by lattice mixture identification and grain boundary detection, we present a framework for lattice pattern representation and comparison, and propose an efficient algorithm for lattice separation. We define new scale and shape…

Image and Video Processing · Electrical Eng. & Systems 2024-12-20 Yuchen He , Sung Ha Kang
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