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Automated analysis of electroencephalography (EEG) has recently undergone a paradigm shift. The introduction of transformer architectures and self-supervised pretraining (SSL) has led to the development of EEG foundation models. These…

Neurons and Cognition · Quantitative Biology 2026-02-04 Hannah Portmann , Yosuke Morishima

EEG signals capture brain activity with high temporal and low spatial resolution, supporting applications such as neurological diagnosis, cognitive monitoring, and brain-computer interfaces. However, effective analysis is hindered by…

Computer Vision and Pattern Recognition · Computer Science 2026-03-16 Amirabbas Hojjati , Lu Li , Ibrahim Hameed , Anis Yazidi , Pedro G. Lind , Rabindra Khadka

Electrocardiogram (ECG) captures the heart's electrical signals, offering valuable information for diagnosing cardiac conditions. However, the scarcity of labeled data makes it challenging to fully leverage supervised learning in the…

Machine Learning · Computer Science 2026-04-13 Sehun Kim

Electroencephalography provides a non-invasive window into brain activity, offering valuable insights for neurological research, brain-computer interfaces, and clinical diagnostics. However, the development of robust machine learning models…

Signal Processing · Electrical Eng. & Systems 2025-02-26 Chi-Sheng Chen , Ying-Jung Chen , Aidan Hung-Wen Tsai

Motivated by the challenge of seamless cross-dataset transfer in EEG signal processing, this article presents an exploratory study on the use of Joint Embedding Predictive Architectures (JEPAs). In recent years, self-supervised learning has…

Machine Learning · Computer Science 2024-10-10 Pierre Guetschel , Thomas Moreau , Michael Tangermann

Decoding information from bio-signals such as EEG, using machine learning has been a challenge due to the small data-sets and difficulty to obtain labels. We propose a reconstruction-based self-supervised learning model, the masked…

Signal Processing · Electrical Eng. & Systems 2022-11-07 Hsiang-Yun Sherry Chien , Hanlin Goh , Christopher M. Sandino , Joseph Y. Cheng

Single-cell foundation models learn by reconstructing masked gene expression, implicitly treating technical noise as signal. With dropout rates exceeding 90%, reconstruction objectives encourage models to encode measurement artifacts rather…

Computational Engineering, Finance, and Science · Computer Science 2026-02-03 Ali ElSheikh , Rui-Xi Wang , Weimin Wu , Yibo Wen , Payam Dibaeinia , Jennifer Yuntong Zhang , Jerry Yao-Chieh Hu , Mei Knudson , Sudarshan Babu , Shao-Hua Sun , Aly A. Khan , Han Liu

Recent advances in electroencephalography (EEG) foundation models, which capture transferable EEG representations, have greatly accelerated the development of brain-computer interfaces (BCIs). However, existing approaches still struggle to…

Machine Learning · Computer Science 2026-03-24 Muyun Jiang , Shuailei Zhang , Zhenjie Yang , Mengjun Wu , Weibang Jiang , Zhiwei Guo , Wei Zhang , Rui Liu , Shangen Zhang , Yong Li , Yi Ding , Cuntai Guan

Electroencephalography (EEG) reflects the brain's functional state, making it a crucial tool for diverse detection applications like seizure detection and sleep stage classification. While deep learning-based approaches have recently shown…

Machine Learning · Computer Science 2025-10-07 Kerui Wu , Ziyue Zhao , Bülent Yener

While foundation models excel in text, image, and video domains, the critical biological signals, particularly electroencephalography(EEG), remain underexplored. EEG benefits neurological research with its high temporal resolution,…

Signal Processing · Electrical Eng. & Systems 2025-05-13 Wei Xiong , Junming Lin , Jiangtong Li , Jie Li , Changjun Jiang

Electroencephalography (EEG) is a non-invasive technique for recording brain activity, widely used in brain-computer interfaces, clinic, and healthcare. Traditional EEG deep models typically focus on specific dataset and task, limiting…

Signal Processing · Electrical Eng. & Systems 2025-09-03 Ang Li , Zikai Wang , Liuyin Yang , Zhenyu Wang , Tianheng Xu , Honglin Hu , Marc M. Van Hulle

Ultrasound (US) imaging poses unique challenges for representation learning due to its inherently noisy acquisition process. The low signal-to-noise ratio and stochastic speckle patterns hinder standard self-supervised learning methods…

Computer Vision and Pattern Recognition · Computer Science 2026-02-24 Ashwath Radhachandran , Vedrana Ivezić , Shreeram Athreya , Ronit Anilkumar , Corey W. Arnold , William Speier

Foundation models for echocardiography often struggle to disentangle anatomical signal from the stochastic speckle and acquisition artifacts inherent to ultrasound. We present EchoJEPA, a foundation model trained on 18 million…

Electroencephalography (EEG) serves as an essential diagnostic tool in neurology; however, its accurate manual interpretation is a time-intensive process that demands highly specialized expertise, which remains relatively scarce and not…

Quantitative Methods · Quantitative Biology 2025-03-14 Ruggero G. Bettinardi , Mohamed Rahmouni , Ulysse Gimenez

Electroencephalography (EEG) is an essential technique for neuroscience research and brain-computer interface (BCI) applications. Recently, large-scale EEG foundation models have been developed, exhibiting robust generalization capabilities…

Signal Processing · Electrical Eng. & Systems 2025-10-15 Zhige Chen , Chengxuan Qin , Wenlong You , Rui Liu , Congying Chu , Rui Yang , Kay Chen Tan , Jibin Wu

Electroencephalography (EEG) offers a non-invasive lens into human brain activity, but building large-scale models is hampered by topological heterogeneity: each public EEG data defines its own electrode layout, limiting generalization. We…

Machine Learning · Computer Science 2025-10-28 Berkay Döner , Thorir Mar Ingolfsson , Luca Benini , Yawei Li

Learning manipulable representations of the world and its dynamics is central to AI. Joint-Embedding Predictive Architectures (JEPAs) offer a promising blueprint, but lack of practical guidance and theory has led to ad-hoc R&D. We present a…

Machine Learning · Computer Science 2025-11-17 Randall Balestriero , Yann LeCun

Electroencephalography (EEG) foundation models hold significant promise for universal Brain-Computer Interfaces (BCIs). However, existing approaches often rely on end-to-end fine-tuning and exhibit limited efficacy under frozen-probing…

Machine Learning · Computer Science 2026-03-20 Jiquan Wang , Sha Zhao , Yangxuan Zhou , Yiming Kang , Shijian Li , Gang Pan

Though self-supervised learning (SSL) has demonstrated incredible ability to learn robust representations from unlabeled data, the choice of optimal SSL strategy can lead to vastly different performance outcomes in specialized domains.…

Computer Vision and Pattern Recognition · Computer Science 2026-03-25 Vedrana Ivezić , Mara Pleasure , Ashwath Radhachandran , Saarang Panchavati , Shreeram Athreya , Vivek Sant , Benjamin Emert , Gregory Fishbein , Corey Arnold , William Speier

Electroencephalography (EEG) is a non-invasive technique for recording brain electrical activity, widely used in brain-computer interface (BCI) and healthcare. Recent EEG foundation models trained on large-scale datasets have shown improved…

Machine Learning · Computer Science 2025-09-29 Yi Ding , Muyun Jiang , Weibang Jiang , Shuailei Zhang , Xinliang Zhou , Chenyu Liu , Shanglin Li , Yong Li , Cuntai Guan
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