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Automatic structuring of electronic medical records is of high demand for clinical workflow solutions to facilitate extraction, storage, and querying of patient care information. However, developing a scalable solution is extremely…

Computation and Language · Computer Science 2020-10-13 Morteza Pourreza Shahri , Amir Tahmasebi , Bingyang Ye , Henghui Zhu , Javed Aslam , Timothy Ferris

Automated text annotation is a compelling use case for generative large language models (LLMs) in social media research. Recent work suggests that LLMs can achieve strong performance on annotation tasks; however, these studies evaluate LLMs…

Computation and Language · Computer Science 2024-09-24 Nicholas Pangakis , Samuel Wolken

Deep-learning-based pipelines have shown the potential to revolutionalize microscopy image diagnostics by providing visual augmentations to a trained pathology expert. However, to match human performance, the methods rely on the…

Large amounts of annotated data have become more important than ever, especially since the rise of deep learning techniques. However, manual annotations are costly. We propose a tool that enables researchers to create large, high-quality,…

Digital Libraries · Computer Science 2021-12-23 Franziska Weeber , Felix Hamborg , Karsten Donnay , Bela Gipp

In this study, we leverage LLM to enhance the semantic analysis and develop similarity metrics for texts, addressing the limitations of traditional unsupervised NLP metrics like ROUGE and BLEU. We develop a framework where LLMs such as…

Computation and Language · Computer Science 2024-02-22 Shaochen Xu , Zihao Wu , Huaqin Zhao , Peng Shu , Zhengliang Liu , Wenxiong Liao , Sheng Li , Andrea Sikora , Tianming Liu , Xiang Li

Current literature on radiology report evaluation has focused primarily on designing LLM-based metrics and fine-tuning small models for chest X-rays. However, it remains unclear whether these approaches are robust when applied to reports…

Artificial Intelligence · Computer Science 2026-04-07 Federica Bologna , Jean-Philippe Corbeil , Matthew Wilkens , Asma Ben Abacha

Obtaining datasets labeled to facilitate model development is a challenge for most machine learning tasks. The difficulty is heightened for medical imaging, where data itself is limited in accessibility and labeling requires costly time and…

Computation and Language · Computer Science 2018-10-03 Nithya Attaluri , Ahmed Nasir , Carolynne Powe , Harold Racz , Ben Covington , Li Yao , Jordan Prosky , Eric Poblenz , Tobi Olatunji , Kevin Lyman

Many contemporary data-driven research efforts in the natural sciences, such as chemistry and materials science, require large-scale, high-performance entity recognition from scientific datasets. Large language models (LLMs) have…

Computation and Language · Computer Science 2025-09-10 Zihan Chen , Lei Shi , Weize Wu , Qiji Zhou , Yue Zhang

Obtaining gold standard annotated data for object detection is often costly, involving human-level effort. Semi-supervised object detection algorithms solve the problem with a small amount of gold-standard labels and a large unlabelled…

Computer Vision and Pattern Recognition · Computer Science 2022-06-03 Somnath Hazra , Pallab Dasgupta

Deep learning in medical imaging often requires large-scale, high-quality data or initiation with suitably pre-trained weights. However, medical datasets are limited by data availability, domain-specific knowledge, and privacy concerns, and…

Image and Video Processing · Electrical Eng. & Systems 2023-12-12 Zelong Liu , Alexander Zhou , Arnold Yang , Alara Yilmaz , Maxwell Yoo , Mikey Sullivan , Catherine Zhang , James Grant , Daiqing Li , Zahi A. Fayad , Sean Huver , Timothy Deyer , Xueyan Mei

The lack of well-structured annotations in a growing amount of RNA expression data complicates data interoperability and reusability. Commonly - used text mining methods extract annotations from existing unstructured data descriptions and…

Genomics · Quantitative Biology 2019-09-27 Jelena Fiosina , Maksims Fiosins , Stefan Bonn

Automatic medical image segmentation plays a critical role in scientific research and medical care. Existing high-performance deep learning methods typically rely on large training datasets with high-quality manual annotations, which are…

Image and Video Processing · Electrical Eng. & Systems 2021-11-17 Shanshan Wang , Cheng Li , Rongpin Wang , Zaiyi Liu , Meiyun Wang , Hongna Tan , Yaping Wu , Xinfeng Liu , Hui Sun , Rui Yang , Xin Liu , Jie Chen , Huihui Zhou , Ismail Ben Ayed , Hairong Zheng

Distant supervision allows obtaining labeled training corpora for low-resource settings where only limited hand-annotated data exists. However, to be used effectively, the distant supervision must be easy to gather. In this work, we present…

Computation and Language · Computer Science 2021-04-16 Michael A. Hedderich , Lukas Lange , Dietrich Klakow

Sparse annotation in remote sensing object detection poses significant challenges due to dense object distributions and category imbalances. Although existing Dense Pseudo-Label methods have demonstrated substantial potential in…

Computer Vision and Pattern Recognition · Computer Science 2025-09-23 Wei Liao , Chunyan Xu , Chenxu Wang , Zhen Cui

Iterative RAG for multi-hop question answering faces challenges with lengthy contexts and the buildup of irrelevant information. This hinders a model's capacity to process and reason over retrieved content and limits performance. While…

Pathological is crucial to cancer diagnosis. Usually, Pathologists draw their conclusion based on observed cell and tissue structure on histology slides. Rapid development in machine learning, especially deep learning have established…

Image and Video Processing · Electrical Eng. & Systems 2020-01-15 Jiangbo Shi , Zeyu Gao , Haichuan Zhang , Pargorn Puttapirat , Chunbao Wang , Xiangrong Zhang , Chen Li

This paper proposes a novel training scheme for fast matching models in Search Ads, which is motivated by the real challenges in model training. The first challenge stems from the pursuit of high throughput, which prohibits the deployment…

Information Retrieval · Computer Science 2019-04-23 Xue Li , Zhipeng Luo , Hao Sun , Jianjin Zhang , Weihao Han , Xianqi Chu , Liangjie Zhang , Qi Zhang

While Large Language Models (LLMs) demonstrate remarkable performance on zero-shot annotation tasks, they often struggle with the specialized conventions of gold-standard benchmarks. We propose the systematic reuse and refinement of…

Computation and Language · Computer Science 2026-05-21 Kon Woo Kim , Jin-Dong Kim , Akiko Aizawa

Large Language Models (LLMs) have demonstrated remarkable capabilities across diverse domains, but developing high-performing models for specialized applications often requires substantial human annotation -- a process that is…

Computation and Language · Computer Science 2025-07-30 Abhinav Arabelly , Jagrut Nemade , Robert D Nowak , Jifan Zhang

Scarcity of labeled data, especially for rare events, hinders training effective machine learning models. This paper proposes SYNAPSE-G (Synthetic Augmentation for Positive Sampling via Expansion on Graphs), a novel pipeline leveraging…