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Longitudinal information in radiology reports refers to the sequential tracking of findings across multiple examinations over time, which is crucial for monitoring disease progression and guiding clinical decisions. Many recent automated…

Computation and Language · Computer Science 2026-01-26 Xinyi Wang , Grazziela Figueredo , Ruizhe Li , Xin Chen

Although the annotation paradigm based on Large Language Models (LLMs) has made significant breakthroughs in recent years, its actual deployment still has two core bottlenecks: first, the cost of calling commercial APIs in large-scale…

Computation and Language · Computer Science 2025-06-23 Yao Lu , Zhaiyuan Ji , Jiawei Du , Yu Shanqing , Qi Xuan , Tianyi Zhou

The unstructured nature of clinical notes within electronic health records often conceals vital patient-related information, making it challenging to access or interpret. To uncover this hidden information, specialized Natural Language…

NLP benchmarks rely on standardized datasets for training and evaluating models and are crucial for advancing the field. Traditionally, expert annotations ensure high-quality labels; however, the cost of expert annotation does not scale…

Computation and Language · Computer Science 2025-09-15 Omer Nahum , Nitay Calderon , Orgad Keller , Idan Szpektor , Roi Reichart

Acquiring high-quality annotations in medical imaging is usually a costly process. Automatic label extraction with natural language processing (NLP) has emerged as a promising workaround to bypass the need of expert annotation. Despite the…

Computation and Language · Computer Science 2019-05-08 Tobi Olatunji , Li Yao , Ben Covington , Alexander Rhodes , Anthony Upton

State-of-the-art supervised NLP models achieve high accuracy but are also susceptible to failures on inputs from low-data regimes, such as domains that are not represented in training data. As an approximation to collecting ground-truth…

Computation and Language · Computer Science 2023-06-29 Parikshit Bansal , Amit Sharma

Radiology reports have been widely used for extraction of various clinically significant information about patients' imaging studies. However, limited research has focused on standardizing the entities to a common radiology-specific…

Computation and Language · Computer Science 2020-09-14 Surabhi Datta , Jordan Godfrey-Stovall , Kirk Roberts

Supervised fine-tuning of large language models relies on human-annotated data, yet annotation pipelines routinely involve multiple crowdworkers of heterogeneous expertise. Standard practice aggregates labels via majority vote or simple…

Machine Learning · Computer Science 2026-04-21 Sajjad Ghiasvand , Mark Beliaev , Mahnoosh Alizadeh , Ramtin Pedarsani

Neural image-to-text radiology report generation systems offer the potential to improve radiology reporting by reducing the repetitive process of report drafting and identifying possible medical errors. These systems have achieved promising…

Computation and Language · Computer Science 2022-10-25 Jean-Benoit Delbrouck , Pierre Chambon , Christian Bluethgen , Emily Tsai , Omar Almusa , Curtis P. Langlotz

In the field of Natural Language Processing (NLP), Named Entity Recognition (NER) is recognized as a critical technology, employed across a wide array of applications. Traditional methodologies for annotating datasets for NER models are…

Computation and Language · Computer Science 2025-01-03 Yuji Naraki , Ryosuke Yamaki , Yoshikazu Ikeda , Takafumi Horie , Kotaro Yoshida , Ryotaro Shimizu , Hiroki Naganuma

The rise of Large Language Models (LLMs) and Retrieval-Augmented Generation (RAG) has rapidly increased the need for high-quality, curated information retrieval datasets. These datasets, however, are currently created with off-the-shelf…

Information Retrieval · Computer Science 2026-02-05 Sameh Khattab , Marie Bauer , Lukas Heine , Till Rostalski , Jens Kleesiek , Julian Friedrich

Data annotation is crucial for developing machine learning solutions. The current paradigm is to hire ordinary human annotators to annotate data instructed by expert-crafted guidelines. As this paradigm is laborious, tedious, and costly, we…

Computer Vision and Pattern Recognition · Computer Science 2026-03-20 Yechi Ma , Wei Hua , Shu Kong

Data annotation and synthesis generally refers to the labeling or generating of raw data with relevant information, which could be used for improving the efficacy of machine learning models. The process, however, is labor-intensive and…

Computation and Language · Computer Science 2024-12-04 Zhen Tan , Dawei Li , Song Wang , Alimohammad Beigi , Bohan Jiang , Amrita Bhattacharjee , Mansooreh Karami , Jundong Li , Lu Cheng , Huan Liu

Building an accurate computer-aided diagnosis system based on data-driven approaches requires a large amount of high-quality labeled data. In medical imaging analysis, multiple expert annotators often produce subjective estimates about…

Computer Vision and Pattern Recognition · Computer Science 2022-03-22 Khiem H. Le , Tuan V. Tran , Hieu H. Pham , Hieu T. Nguyen , Tung T. Le , Ha Q. Nguyen

Feature-based self-explanatory methods explain their classification in terms of human-understandable features. In the medical imaging community, this semantic matching of clinical knowledge adds significantly to the trustworthiness of the…

Image and Video Processing · Electrical Eng. & Systems 2022-11-08 Jiahao Lu , Chong Yin , Oswin Krause , Kenny Erleben , Michael Bachmann Nielsen , Sune Darkner

With the rapid development of large language models (LLMs), their application to cell type annotation has drawn increasing attention. However, general-purpose LLMs often face limitations in this specific task due to the lack of guidance…

Computation and Language · Computer Science 2026-04-10 Dezheng Han , Yibin Jia , Ruxiao Chen , Wenjie Han , Shuaishuai Guo , Jianbo Wang

Electronic design engineers often struggle to efficiently access relevant information for tasks like design verification and technology development. While large language models (LLMs) can enhance productivity as conversational agents,…

Computation and Language · Computer Science 2025-06-10 Luyao Shi , Michael Kazda , Charles Schmitter , Hemlata Gupta

NLP has a significant role in advancing healthcare and has been found to be key in extracting structured information from radiology reports. Understanding recent developments in NLP application to radiology is of significance but recent…

Generative information extraction using large language models, particularly through few-shot learning, has become a popular method. Recent studies indicate that providing a detailed, human-readable guideline-similar to the annotation…

Computation and Language · Computer Science 2025-04-07 Enshuo Hsu , Martin Ugbala , Krishna Kumar Kookal , Zouaidi Kawtar , Nicholas L. Rider , Muhammad F. Walji , Kirk Roberts

Reliability in cell type annotation is challenging in single-cell RNA-sequencing data analysis because both expert-driven and automated methods can be biased or constrained by their training data, especially for novel or rare cell types.…

Quantitative Methods · Quantitative Biology 2024-09-25 Wenjin Ye , Yuanchen Ma , Junkai Xiang , Hongjie Liang , Tao Wang , Qiuling Xiang , Andy Peng Xiang , Wu Song , Weiqiang Li , Weijun Huang
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