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Topological data analysis (TDA) is a rapidly developing collection of methods for studying the shape of point cloud and other data types. One popular approach, designed to be robust to noise and outliers, is to first use a smoothing…

Methodology · Statistics 2017-12-27 Chul Moon , Noah Giansiracusa , Nicole A. Lazar

Network dynamics offers critical insights into the behavior and evolution of complex systems. Here, we focus on the topological dynamics of networks to explore a unique process for reducing the average distance: topological compression. The…

General Topology · Mathematics 2025-08-07 Jian-Hui Li , Zu-Guo Yu , Yu-Chu Tian

Persistence diagrams (PDs) are now routinely used to summarize the underlying topology of complex data. Despite several appealing properties, incorporating PDs in learning pipelines can be challenging because their natural geometry is not…

Machine Learning · Statistics 2018-11-14 Théo Lacombe , Marco Cuturi , Steve Oudot

We propose a topological framework for the detection of Hopf bifurcations directly from time series, based on persistent homology applied to phase space reconstructions via Takens embedding within the framework of Topological Data Analysis.…

Dynamical Systems · Mathematics 2026-03-31 Jhonathan Barrios , Yásser Echávez , Carlos F. Álvarez

Topological Data Analysis (TDA) provides a pipeline to extract quantitative topological descriptors from structured objects. This enables the definition of topological loss functions, which assert to what extent a given object exhibits some…

Artificial Intelligence · Computer Science 2024-05-30 Mathieu Carriere , Marc Theveneau , Théo Lacombe

We introduce a model for the dynamic self-organization of the electric grid. The model is characterized by a conserved magnitude, energy, that can travel following the links of the network to satisfy nodes' load. The load fluctuates in time…

Physics and Society · Physics 2016-08-16 Alessandro Scirè , Idán Tuval , Víctor M. Eguíluz

Recent advances in cellular research demonstrate that scRNA-seq characterizes cellular heterogeneity, while spatial transcriptomics reveals the spatial distribution of gene expression. Cell representation is the fundamental issue in the two…

Genomics · Quantitative Biology 2025-01-16 Kai Zheng , Shaokai Wang , Yunpei Xu , Qiming Lei , Qichang Zhao , Xiao Liang , Qilong Feng , Yaohang Li , Min Li , Jinhui Xu , Jianxin Wang

Optimal transport has been an essential tool for reconstructing dynamics from complex data. With the increasingly available multifaceted data, a system can often be characterized across multiple spaces. Therefore, it is crucial to maintain…

Optimization and Control · Mathematics 2024-06-06 Zixuan Cang , Yanxiang Zhao

Point-cloud persistent homology (PH) -- computing alpha or Rips complexes on spin-position point clouds -- has been widely applied to detect phase transitions in classical spin models since Donato et al. (2016), with subsequent studies…

Statistical Mechanics · Physics 2026-04-01 Matthew Loftus

In this paper, we extended road-based topological analysis to both nationwide and urban road networks, and concentrated on a sensitivity study with respect to the formation of self-organized natural roads based on the Gestalt principle of…

Data Analysis, Statistics and Probability · Physics 2008-07-14 Bin Jiang , Sijian Zhao , Junjun Yin

In topology, one averages over local geometrical details to reveal robust global features. This approach proves crucial for understanding quantized bulk transport and exotic boundary effects of linear wave propagation in (meta-)materials.…

Mesoscale and Nanoscale Physics · Physics 2024-06-25 Greta Villa , Javier del Pino , Vincent Dumont , Gianluca Rastelli , Mateusz Michałek , Alexander Eichler , Oded Zilberberg

Deep neural networks for 3D point cloud understanding have achieved remarkable success in object classification and recognition, yet recent work shows that these models remain highly vulnerable to adversarial perturbations. Existing 3D…

Computer Vision and Pattern Recognition · Computer Science 2026-04-14 Gayathry Chandramana Krishnan Nampoothiry , Raghuram Venkatapuram , Anirban Ghosh , Ayan Dutta

In this paper, we present a flexible and probabilistic framework for tracking topological features in time-varying scalar fields using merge trees and partial optimal transport. Merge trees are topological descriptors that record the…

Computational Geometry · Computer Science 2025-08-26 Mingzhe Li , Xinyuan Yan , Lin Yan , Tom Needham , Bei Wang

In many real-world settings--e.g., single-cell RNA sequencing, mobility sensing, and environmental monitoring--data are observed only as temporally aggregated snapshots collected over finite time windows, often with noisy or uncertain…

Machine Learning · Computer Science 2026-05-25 Keisuke Kawano , Takuro Kutsuna , Naoki Hayashi , Yasushi Esaki , Hidenori Tanaka

Topological deep learning (TDL) is a rapidly growing field that seeks to leverage topological structure in data and facilitate learning from data supported on topological objects, ranging from molecules to 3D shapes. Most TDL architectures…

Machine Learning · Computer Science 2025-02-13 Yam Eitan , Yoav Gelberg , Guy Bar-Shalom , Fabrizio Frasca , Michael Bronstein , Haggai Maron

In this study, we present and analyze a framework for geometric and topological estimation for mapping of unknown environments. We consider agents mimicking motion behaviors of cyborg insects, known as biobots, and exploit coordinate-free…

Robotics · Computer Science 2016-07-04 Alireza Dirafzoon , Alper Bozkurt , Edgar Lobaton

Modern transportation network modeling increasingly involves the integration of diverse methodologies including sensor-based forecasting, reinforcement learning, classical flow optimization, and demand modeling that have traditionally been…

Optimization and Control · Mathematics 2025-07-08 Xuesong , Zhou , Taehooie Kim , Mostafa Ameli , Henan , Zhu , Yu- dai Honma , Ram M. Pendyala

Point cloud-based object/place recognition remains a problem of interest in applications such as autonomous driving, scene reconstruction, and localization. Extracting a meaningful global descriptor from a query point cloud that can be…

Robotics · Computer Science 2025-08-04 Anirban Ghosh , Iliya Kulbaka , Ian Dahlin , Ayan Dutta

Networks are important representations in computer science to communicate structural aspects of a given system of interacting components. The evolution of a network has several topological properties that can provide us information on the…

Social and Information Networks · Computer Science 2020-04-30 Joao Pita Costa , Tihana Galinac Grbac

Network topology has significant impacts on operational performance of power systems. While extensive research efforts have been devoted to optimization of network topology for improving various system performances, the problem of how to…

Systems and Control · Electrical Eng. & Systems 2022-08-23 Tong Han , David J. Hill , Yue Song